BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930461
Length=1559
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24200.2 | Symbols: | FAD/NAD(P)-binding oxidoreductase fam... 2527 0.0
> AT3G24200.2 | Symbols: | FAD/NAD(P)-binding oxidoreductase family
protein | chr3:8747831-8751369 REVERSE LENGTH=1991
Length=1991
Score = 2527 bits (1368), Expect = 0.0
Identities = 1476/1530 (96%), Gaps = 0/1530 (0%)
Strand=Plus/Plus
Query 25 ACAGGGTGCTTGCAAGGAATCTTAGGACAAGTGTCTGTGGGACAAGGATTTTGCAGAGGA 84
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 214 ACAGGGTGCTCGCAAGGAATCTTAGGACAAGTGTCTGTGGAACAAGGATTTTGCAGAGGA 273
Query 85 CTTGTTCAACTGTTGTGACACATGAAGTTTCTAGTTCTGGTTCTAATGAGAGTAATGCAA 144
||||||| ||||||||||||||||| ||||||| |||| |||| |||||||| ||||||
Sbjct 274 CTTGTTCGACTGTTGTGACACATGATGTTTCTACTTCTTGTTCCAATGAGAGCAATGCAT 333
Query 145 TAAGGAATTCTACTGACGATGGTCCACAACATGACATTGCTATTGTTGGTGGTGGAATGG 204
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 334 TAAATAATTCCACTGACGATGGTCCACAACATGACATTGCTATTGTTGGTGGTGGAATGG 393
Query 205 TTGGAATCGCTTTAGCTGCTTCATTGGCAAGCAAGCCATTGACAAAGCACTTGAATGTTG 264
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 394 TTGGAATCGCTTTAGCTGCTTCATTGGCCAGCAAGCCATTGACAAAGCACTTGAATGTCG 453
Query 265 CTATTATTGACAATAATCCTCTTTTGGGGAGAAAAAATATCATAGAGAAAGGGCATCCAC 324
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 454 CTATTATTGACAATAATCCTCTTTTGGGGAGAAGAAATATCATAGAGAAAGGGCATCAAC 513
Query 325 CTGATCCCAGAGTCAGTACAGTCACACCTGCAACAATATCCTTCCTCAAAGATATTGGTG 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 CTGATCCCAGAGTCAGTACAGTCACACCTGCAACAATATCCTTCCTCAAAGATATTGGTG 573
Query 385 CCTGGAAATACATTGAGGAACAGCGACATGCGTATTTTGATAAGATGCAGGTATGGGACT 444
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 574 CCTGGAAATACATTGAGCAACAGCGACATGCGTATTTTGATAAGATGCAGGTATGGGACT 633
Query 445 ATACGGGACTTGGATATACAAGATACAATGCTAATGATGTACATCAAGATGTTTTGGGGT 504
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 ATACAGGCCTTGGATATACAAGATACAATGCTAATGATGTACATCAAGATGTTTTGGGGT 693
Query 505 GTGTAGTGGAGAATAAAGTTCTTCAGAGTTCTCAGCTATCTTGTGTACAGGAATCAGATC 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 GTGTAGTGGAGAATAAAGTTCTTCAGAGTTCTCAGCTATCTTGTGTACAGGAATCAGATC 753
Query 565 TCCAGAAGACTGTTTATCCCGCAAGGTTAAACGCGATGGATATGCTACCTAGCTCTTCGT 624
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 754 TCCAGAAGACTGTTTATCCCGCGAGGTTAAATGCGATGGATATGCTACCTAGCTCTTCGT 813
Query 625 TGACAGGTCTTGGTGAAGTACCATCCTCAACAGACTTGTTCATGCGAGGACGCCTTGCTA 684
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 814 TGACAGGTCTTGGTGAAGTACCATCCACAACAGACTTGTTCATGCGAGGACGCCTTGCTA 873
Query 685 AGCTGGAGCTAAGCGATGGAAATCATGTCTATGCAAAACTGGTGGTAGGCGCTGATGGGT 744
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 874 AGCTGGAGCTAAGCGATGGAAATCGCGTCTACGCAAAACTGGTGGTAGGCGCTGATGGGT 933
Query 745 CTAAGTCGCGAGTAAGGGAGTTGGCAGGGATCAAAACGACTGGATGGAACTACTCACAAA 804
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 934 CTAAGTCGCGAGTAAGGGAGTTGGCTGGGATCAAAACGACTGGATGGAACTACTCACAGA 993
Query 805 ACGCTATAATTTGTACTGTTGAGCATACTGTTGAAAACTACACAGCATGGCAACGGTTTT 864
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 994 ACGCTATAATTTGTACTGTTGAGCATACAGCCGAAAACTACACAGCATGGCAACGGTTTT 1053
Query 865 TACCCAATGGCCCAATCGCACTTCTTCCCATTGGTGACAAGTTTAGCAACATAGTATGGA 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 TACCCAATGGCCCAATCGCACTTCTTCCCATTGGTGACAAGTTTAGCAACATAGTATGGA 1113
Query 925 CTATGGACCCAAAAGAGGCATCAGATCGAAAATTGATGAACGAGGATGACTTCATTAAAG 984
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1114 CCATGGACCCAAAAGAGGCATCAGATCGAAAATTGATGAACGAGGATGACTTCATCAAAG 1173
Query 985 CTGTAAATGACGCTCTGGATTCTGGATATGGTCCAAATCCAGAGACTACAAGTTCACCGG 1044
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1174 CTGTAAATGATGCTCTGGATTCTGGATATGGTCCTAATCCAGAGACTACAAGTTCACGGG 1233
Query 1045 ATAGTCTCTCTTGGCTTACAGGAGATTCGACCATATCTGCCAAAGAGAGGTTTGAAACTC 1104
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1234 ATAGTCTCTCTTGGCTTACAGGAGATGCGACCATATCTGCCAAAGAGAGGTTTGAAACTC 1293
Query 1105 CTCCCAAGGTTGTGAAGCTTTCTTCAGAAAGAATGATGTTCCCTTTGTCTTTAAGGCACG 1164
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1294 CTCCCAAGGTTGTGAAGCTTTCTTCAGAGAGAATGATGTTCCCTTTGTCTTTAAGGCACG 1353
Query 1165 CAAAAGACTATGTGTCAAAGCGTGTGGCTCTTGTTGGTGACTCAGCTCATACTGTTCACC 1224
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1354 CAAAAGACTATGTGTCAAAACGTGTGGCTCTTGTTGGTGACTCAGCTCATACAGTTCACC 1413
Query 1225 CGTTGGCTGGTCAAGGAGTGAATCTAGGATTTGCAGATGCATGTGCTCTCTCCAAAGCTA 1284
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1414 CGTTGGCTGGTCAAGGAGTAAATCTAGGATTTGCAGATGCGTGTGCTCTCTCCAAAGCTA 1473
Query 1285 TATCAGAAGGCATTGCTCTTGGTACCGATATAGGCGAGTCGAATCTGCTCAAACGATATG 1344
|| |||| ||||||||||||||||| |||||||||||| |||||||||||||||| ||||
Sbjct 1474 TAGCAGAGGGCATTGCTCTTGGTACTGATATAGGCGAGGCGAATCTGCTCAAACGTTATG 1533
Query 1345 AAGCAGAGAGAAAACCTGCAAATATAGCAATGATGGCGGTTTTAGACGGAATCCAGAAGA 1404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1534 AAGCAGAGAGAAAACCTGCAAATATAGCAATGATGGCGGTTTTAGACGGAATCCAGAAGA 1593
Query 1405 TGTACTCGGTGGATTTCGGCCCGCTGAATGCTCTAAGAGCGGCTGCATTCCACGGGGCTC 1464
|||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1594 TGTACTCGTTGGATTTCGGACCGCTGAATGCTCTAAGAGCAGCTGCATTCCACGGGGCTC 1653
Query 1465 ACTACATTTCGCCGCTTAAAAAGCGAATCATATCTTATGCTTCAGGAGATCAATCTTTGC 1524
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1654 ACTACATTTCGCCGCTTAAAAAGCGTATCATATCTTATGCTTCAGGAGAGCAATCTTTGC 1713
Query 1525 CGCTGTTTTCTTGAAGAACGCTAGGGATTG 1554
|||| ||||||||||||| || ||||||||
Sbjct 1714 CGCTATTTTCTTGAAGAATGCGAGGGATTG 1743
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76957435485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5