BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930466
Length=1139
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24160.1 | Symbols: PMP | putative type 1 membrane protein |... 1742 0.0
> AT3G24160.1 | Symbols: PMP | putative type 1 membrane protein
| chr3:8726122-8729389 FORWARD LENGTH=1580
Length=1580
Score = 1742 bits (943), Expect = 0.0
Identities = 1080/1145 (94%), Gaps = 14/1145 (1%)
Strand=Plus/Plus
Query 1 CGTCGACTTTCGTTGTTAAAGATGAAAACTTTCTACGTACTCGTCGTCT-CTCTTCTTCT 59
|||||||| ||||| |||||||||||| ||||||||||| |||| || | ||||||||||
Sbjct 99 CGTCGACTCTCGTTCTTAAAGATGAAAGCTTTCTACGTATTCGTTGT-TGCTCTTCTTCT 157
Query 60 CACAC-TCAATTATAGGGGAGAAGCAAGTGGTTCTGTTTTCTTCATTGATGGATCCAATA 118
||| | | |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 158 CAC-CTTGAATTATAGGGGAGAAGCAAGTGGTTCTGTTTTCTTCATTGATGGATCCAACA 216
Query 119 ACCAATTTCTTCGTCCACGATCATCCAGCGAGGCACTTCCCATGTCGCCT-TCTGAAATA 177
| |||| ||||||||||||||||||||| ||||||||||||||||||||| | |||||||
Sbjct 217 ATCAATATCTTCGTCCACGATCATCCAGTGAGGCACTTCCCATGTCGCCTGT-TGAAATA 275
Query 178 TCGT-CAGCAGTGTCTGCCTTGTTGGGTTTTGCACCTTCAGCAACTTTGACAGCTGATGG 236
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 TC-TGCAGCAGTGTCTGCCTTGTTGGGTTTTGCACCTTCAGCAACTTTGACAGCTGATGG 334
Query 237 CTCATCCAAGCTGAACAAGATTCTAAAACCTAATCCATTTGAGAGGCCTCGTGCTGCTTT 296
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 335 CTCATCCAAGTTGAACAAGATTCTAAAACCTAATCCATTTGAGAGGCCTCGCGCTGCTTT 394
Query 297 TGTGCTAGAAATCGCTGGAGCTGATGATGTGCTTGTGGAAACCTCCCCTAGTCATCCTTT 356
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct 395 TGTGCTAGAAATCGCTGGAGCTGATGATATGCTTTTGGAAACCTCCCCTAGTCATTCTTT 454
Query 357 CTTGGGAAATGCCATAAGGAGCAGTATTAAGTCTGATTCATACAAAGCTGACACTGAACT 416
|||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 455 CTTGGGCAATGCCATAAGGAGCAGTATTAAGTCTGATTCGTACAAAGCTGATACTGAACT 514
Query 417 TCCAGACAGTGAAGTGGTTTTTGTGTCTGTCAATGAACCCGCATCTGATGTGACTGACAA 476
|||||||| |||||||||| |||||||||||||||||||| | |||||||||||||||||
Sbjct 515 TCCAGACAATGAAGTGGTTGTTGTGTCTGTCAATGAACCCTCCTCTGATGTGACTGACAA 574
Query 477 GGACATAAATGATTTTGCATCTTGGTTGGGTGGATCATATGTTGCTGGCTCTGCTGAACA 536
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 575 GGACATTAATGATTTTGCATCTTGGTTGGGTGGATCATATGTTGCTGG---AGCTGAACC 631
Query 537 ATTGTCTGGATTGTTGAGTGTCCCTCTGGCTGGGGGTGCTAATGTGGAGTTCAATTTAGA 596
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 632 ATCGTCTGGATTGTTGAGTATCCCTCTGGCTGGGGGTGCTAATGTGGAGTTCAATTTGGA 691
Query 597 AAAGGAAGCAGAGAGGAAATTTGTATTGAACCTTTTGGGTCTATATCAGAATATCAGACG 656
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 692 AAAGGAAGCAGAGAGGAAATTTGCATTGAACCTTTTGGGTCTATATCAGAATATCAGACA 751
Query 657 GGCAGTCAGCGTTCATGACGATTTATCTCATGGTATTGAGAGAACTGCTGAATTAACGGT 716
||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 752 GGCAGTCAGCGTTTATGACGATTTATCTCATGGTATTGACAGAACTGCCGAATTAACGGT 811
Query 717 TGGACGCTTTGGTGGTATCAATGCTTTAGCACAGGAGTATGGACAAGGTATGGCTAAGCA 776
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 812 TGGACGCTTTGGTGGTATCGATGCTTTAGCACAGGAGTATGGACAAGGTATGGCTAAGCA 871
Query 777 AGGCATGAATGTATTGCTTTCCACACTATCTAAGCTATTCAATCTGTTGGAGACTTCTCA 836
||| ||| ||||||| ||||||||| |||| ||||||||||||||||||||||| |||||
Sbjct 872 AGGGATGGATGTATTACTTTCCACATTATCAAAGCTATTCAATCTGTTGGAGACATCTCA 931
Query 837 TAAAGGCCAAATTGTTGGGGTTATCGTCCTTGATGAGAGAGTAAACCAAGAATCA-ACAA 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 932 TAAAGGCCAAATTGTTGGGGTTATCGTCCTTGATGAGAGAGTAAACCAAGAATCAGA-AA 990
Query 896 ATCTTTTGAACTTTGGGTCTTCTCGTTCATCTGCACGCTCAATGGCGGAAGTAGAGGGAA 955
|||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||
Sbjct 991 ATCTTTTGAACTTTGGGTCTTCCCGTTCATCTGCACGCTCAATGGTGGAAGTGGAGGGAA 1050
Query 956 TTCCAAGTGCAGCAATTATCGCTGAGGTTATACTTGTTAGGCTGACTCTTGCATGGTTGA 1015
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 TTCCAAGTGCAGCCATTATCGCTGAGGTTATACTTGTTAGGCTGACTCTTGCATGGTTGA 1110
Query 1016 CTGGAATCATTCTTCTCATTGCAACTATCCTTGGGGTGTACTTCCTTATGAACATGCCTT 1075
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1111 CTGGAATCATTCTTCTCATTGCAACTATCCTTGGGGTATACTTCCTTATGAACATGCCTT 1170
Query 1076 TGACGAAGGATACGCTTTTATATTCAAACGTGAAGCTCGACTAAGAGATGAAACGGAGCT 1135
||||||||||||| ||| |||||||||| || |||||||||||||| ||||||| |||||
Sbjct 1171 TGACGAAGGATACTCTTCTATATTCAAATGTAAAGCTCGACTAAGAAATGAAACAGAGCT 1230
Query 1136 T-AAA 1139
| |||
Sbjct 1231 TCAAA 1235
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55873206585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5