BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930468
Length=1243
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24140.1 | Symbols: FMA | basic helix-loop-helix (bHLH) DNA-... 2013 0.0
> AT3G24140.1 | Symbols: FMA | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:8715236-8718211 REVERSE
LENGTH=1729
Length=1729
Score = 2013 bits (1090), Expect = 0.0
Identities = 1181/1225 (96%), Gaps = 6/1225 (0%)
Strand=Plus/Plus
Query 1 ATCAATTAGCACGAATAGCAATGGATAAAGATTACTCGGCACCAAACTTCTTAGGTGAAT 60
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 ATCAACTACCACGAATAGCAATGGATAAAGATTACTCGGCACCAAACTTCTTAGGTGAAT 235
Query 61 CCTCAGGCGGAAACGATGATAACAGCTCCGGTATGATAGACTATATGTTCAATAGAAACC 120
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 236 CCTCAGGCGGTAACGATGATAACAGCTCTGGTATGATAGACTATATGTTCAATAGAAACC 295
Query 121 TTCAACAACAACAAAAGCAATCGATGCCACAACAGCAGCATCATCAACTGTCTCCTTCCG 180
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 296 TTCAACAACAACAAAAGCAATCGATGCCACAACAGCAGCAACATCAACTCTCTCCTTCCG 355
Query 181 GATTTGGAGCAACACCTTTTGATAAAATGAACTTCTCTGATGTGATGCAGTTTGCGGACT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GATTTGGAGCAACACCTTTTGATAAAATGAACTTCTCTGATGTGATGCAGTTTGCGGACT 415
Query 241 TCGGTCCGAAACTGGCGTTGAACCAGACCAGAAACCAAGACGATCAAGAAACCGGGATTG 300
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 TCGGTTCGAAACTTGCGTTGAACCAGACCAGAAACCAAGACGATCAAGAAACCGGGATTG 475
Query 301 ACCCGGTTTATTTCTTGAAGTTCCCTGTCTTGAACGACAAGATAGAGGACCATAACCAAA 360
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 476 ACCCCGTTTATTTCTTGAAGTTCCCTGTCTTGAACGACAAAATAGAGGACCATAACCAAA 535
Query 361 CCCAACATCTCATGCCTTCTCATCAGACGTCTCAAGAAGGAGGTGAGTGTGGAGGAAACA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 CCCAACATCTCATGCCTTCTCATCAGACGTCTCAAGAAGGAGGTGAGTGTGGAGGAAACA 595
Query 421 TAGGCAACGTGTTTCTTGAAGAAAAAGAGGATCAAGAC---G---ACGACAACAACTCCG 474
||||||| |||||||||||||||||||| ||||||||| | |||||||||||||||
Sbjct 596 TAGGCAATGTGTTTCTTGAAGAAAAAGAAGATCAAGACGATGACAACGACAACAACTCCG 655
Query 475 TGCAACTCCGTTTTATTGGAGGAGAAGAAGAAGATAGGGAGAACAAGAATGTTACGACAA 534
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 656 TGCAACTACGTTTTATTGGAGGAGAAGAAGAAGATAGGGAGAACAAGAATGTTACGAAAA 715
Query 535 AGGAGGTGAAGAGCAAGAGGAAGAGAGCTAGAACGAGCAAAACTAGCGAAGAAGTGGAAA 594
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 716 AGGAGGTGAAGAGCAAGAGGAAGAGAGCTAGAACGAGCAAGACCAGCGAAGAAGTGGAAA 775
Query 595 GCCAAAGGATGACTCATATCGCGGTCGAAAGGAACCGTAGGAAGCAAATGAATGAGCATC 654
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 776 GCCAACGGATGACTCATATCGCGGTCGAAAGAAACCGTAGGAAGCAAATGAATGAGCATC 835
Query 655 TTCGTGTTCTAAGATCTCTCATGCCTGGCTCCTACGTTCAAAGAGGAGACCAAGCGTCGA 714
||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 836 TTCGTGTCCTTAGATCTCTCATGCCTGGCTCCTACGTTCAAAGGGGAGACCAAGCGTCAA 895
Query 715 TCATAGGAGGAGCAATAGAGTTTGTGAGAGAGCTCGAGCAACTCCTACAATGTCTAGAAT 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 896 TCATAGGAGGAGCAATAGAGTTTGTGAGAGAGCTCGAGCAACTCCTACAATGTCTTGAAT 955
Query 775 CACAGAAGCGTCGAAGAATCCTAGGAGAAACCGGTAGGGACATGACCACGACAACGACTT 834
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 956 CACAGAAGCGTCGAAGAATCTTAGGAGAAACCGGTAGGGACATGACAACGACAACGACTT 1015
Query 835 CTTCTTCTTCTCCCATAACTGCGGTAGCTAACCAAACACAACCGCTCATTATTACTGGTA 894
|||||||||||||||||||| ||||||| |||||| ||||||||||||||||||| || |
Sbjct 1016 CTTCTTCTTCTCCCATAACTACGGTAGCGAACCAAGCACAACCGCTCATTATTACGGGAA 1075
Query 895 ATGTAACCGAACTAGAGGGCGGAGGAGGGCTTCGGGAGGAGACCGCGGAGAACAAGTCGT 954
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1076 ATGTAACCGAGCTAGAGGGCGGAGGAGGGCTTCGGGAGGAGACTGCGGAGAACAAGTCGT 1135
Query 955 GCTTGGCTGACGTGGAGGTGAAGCTGCTAGGGTTTGATGCCATGATCAAGATACTTTCAA 1014
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1136 GCTTGGCTGACGTGGAGGTGAAGCTGCTAGGGTTTGACGCCATGATCAAGATACTTTCAA 1195
Query 1015 GAAGAAGGCCAGGACAATTGATTAAGACTATAGCTGCTTTGGAGGATCTTCATCTCTCTA 1074
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 GAAGAAGGCCGGGACAGCTGATTAAGACTATAGCTGCTTTGGAGGATCTTCATCTCTCTA 1255
Query 1075 TTCTTCACACTAACATCACTACCATGGAACAAACCGTCCTCTACTCCTTTAACGTCAAGA 1134
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1256 TTCTTCACACTAACATCACTACCATGGAACAAACCGTCCTCTACTCCTTTAATGTCAAGA 1315
Query 1135 TAACAAGTGAAACGAGGTTTACGGCAGAAGACATAGCAAGTTCCATCCAACAGATATTTA 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 TAACAAGTGAAACGAGGTTTACGGCAGAAGACATAGCAAGTTCCATCCAACAGATATTTA 1375
Query 1195 GTTTCATTCACGCAAATACCAACAT 1219
|||||||||| ||||||||||||||
Sbjct 1376 GTTTCATTCATGCAAATACCAACAT 1400
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61094063265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5