BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930474

Length=493
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G24100.1 | Symbols:  | Uncharacterised protein family SERF |...   283    1e-75
  AT2G30810.1 | Symbols:  | Gibberellin-regulated family protein ...   167    1e-40


> AT3G24100.1 | Symbols:  | Uncharacterised protein family SERF 
| chr3:8703286-8704228 FORWARD LENGTH=480
Length=480

 Score =  283 bits (153),  Expect = 1e-75
 Identities = 201/223 (90%), Gaps = 8/223 (4%)
 Strand=Plus/Plus

Query  278  AGGAAGCCAAAGAGAGCGTGATCGTGAAAGGGCTCTAGCTCGAACCGGAGGTAAAGGAAA  337
            |||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct  96   AGGAAGTCAAAGAGAGCGTGACCGTGAAAGGGCTCTAGCTCGAACCGGAGGCAAAGGAAA  155

Query  338  G-ACTAAAGATGATGGGTTAACTCCAGAGCAACGTCGTGAAAGAGATGCAAAAGCATTGC  396
            | || ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct  156  GAAC-AAAGATGATGGATTAACTCCTGAGCAACGTCGTGAAAGAGATGCAAAAGCATTGC  214

Query  397  AAGAGAAGGCTGCAAAGAAAGCTGCTCAAGCTGCAGCTGCAGCTAGCTC---AGGAGGAG  453
            |||||||| |||||||||||||||||||||| || ||||||||||| ||   ||||||||
Sbjct  215  AAGAGAAGACTGCAAAGAAAGCTGCTCAAGCCGCTGCTGCAGCTAGTTCCGGAGGAGGAG  274

Query  454  G---CAAAGGAAACAATAAATGAGAAATTATGATCCATGTTTC  493
            |   ||||||||||||||| |||||||  |||||| ||| |||
Sbjct  275  GAGGCAAAGGAAACAATAAGTGAGAAAAAATGATCTATGCTTC  317


> AT2G30810.1 | Symbols:  | Gibberellin-regulated family protein 
| chr2:13127826-13128666 REVERSE LENGTH=476
Length=476

 Score =  167 bits (90),  Expect = 1e-40
 Identities = 169/206 (82%), Gaps = 10/206 (5%)
 Strand=Plus/Plus

Query  81   TCCA-ATGAA-GGAGGAGAGGGTTCACTT--ACTATTGGACAATGTCCTGCGGCATGT-A  135
            |||| | ||| |||||||| || ||||||  || |  | | |||||||   ||||||| |
Sbjct  137  TCCATAAGAATGGAGGAGAAGGCTCACTTAAACCA--GAAGAATGTCCAAAGGCATGTGA  194

Query  136  ATGTTCGGTGCTCAGCAACATCTCATAAGAAGCCATGTTTGTTCTACTGCAACTATTGTT  195
            ||  ||| || || || |||||||| | ||| ||||||||||| |  |||||| | ||||
Sbjct  195  AT-ATCGATGTTCGGCGACATCTCACAGGAAACCATGTTTGTTTTTTTGCAACAAATGTT  253

Query  196  GCAACAAATGTTTGTGTGTACCATCGGGAACGTATGGACATAAAGAAGAATGTCCTTGCT  255
            | ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct  254  GTAACAAATGTTTGTGTGTACCATCGGGAACATATGGACACAAAGAAGAATGTCCTTGCT  313

Query  256  ACAACAATTGGAAGACTCAA-GAAGG  280
            |||| ||||||| ||| ||| |||||
Sbjct  314  ACAATAATTGGACGAC-CAAAGAAGG  338



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23509580796


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5