BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930475
Length=499
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24093.1 | Symbols: | Paired amphipathic helix (PAH2) super... 259 2e-68
> AT3G24093.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily
protein | chr3:8701322-8702466 REVERSE LENGTH=1145
Length=1145
Score = 259 bits (140), Expect = 2e-68
Identities = 368/471 (78%), Gaps = 43/471 (9%)
Strand=Plus/Plus
Query 58 TAAAACTCCCC-ACTGATTACTCTCGGGAGGAGTTTGAGAGAGC-TTGCGAGTTCGTGAA 115
||||||||||| || |||| ||| | | | |||||| || |||| ||| |||||||||||
Sbjct 188 TAAAACTCCCCAAC-GATTGCTCGCAGAAAGAGTTTAAGCGAGCGTTG-GAGTTCGTGAA 245
Query 116 GCAAGTAAAAGAGATTGATGAAGAACAAAACCACAGAGGAATCTTCATTCAATATATC-A 174
| |||||||||||||||||||| || ||||||||||||||||||| ||| ||||| | |
Sbjct 246 GAAAGTAAAAGAGATTGATGAAAAAGGAAACCACAGAGGAATCTTCCTTCGATATA-CTA 304
Query 175 CTGCAATGAAGCTTTATCGA-TCTGGATCTTTGGA-C-ATGGTCGAGGTCAAAAACAGAA 231
|||||||||||||||| | | ||||||||||| || | | ||||| ||||||||||||
Sbjct 305 CTGCAATGAAGCTTTA-CTATTCTGGATCTTT-GAGCGA-AGTCGATCTCAAAAACAGAA 361
Query 232 TCACGACCATTTTCAAGAACTGCGACGTTTTGCTCGATGGCTTTCATAGGATTA-TGAAA 290
||||||| ||||||||||||||||||||||||||||||| |||| || | ||| || ||
Sbjct 362 TCACGACTATTTTCAAGAACTGCGACGTTTTGCTCGATGCCTTTGATCG-ATTTCTGGAA 420
Query 291 GATTCGGATT---GT-C-----AAGACCA--TATC-GTTGTTC-------T-T-AAACGA 329
|||||| ||| || | || | | | | |||| || | | ||||||
Sbjct 421 GATTCGAATTCCAGTTCTCGTCAAAAGGAAGTTTTTGTTGATCCAAAGAATGTTAAACGA 480
Query 330 ATGGTGGGGTTCTTGAAGGCGTTGGCGAA-AGAGTCCGAGAGA-TTACGACTAGGG-TTA 386
|| || |||||| ||| ||||| ||| ||| | |||| || ||| | || | |||
Sbjct 481 ATAAAGGAGTTCTTAAAGTCGTTGA-GAAGAGACTGCGAG-GAATTATGTGGAGTGCTTA 538
Query 387 ATGGAGGCTTTCGTGAGATTCAAGGAACATAAAGATG-GACAGGTTCTGAAGGAACAAGT 445
| |||||||||||||| |||||||||||||| |||| | ||| || | || || | ||
Sbjct 539 -TAGAGGCTTTCGTGAGGTTCAAGGAACATAACGATGTG-CAGATTTTAAAAGATGATGT 596
Query 446 TGACCTTATGTTACGAGATTATCCTTGTCTATAAGAAGAATTTAGGAGGAT 496
|||||| |||||||||||||||||| ||||| |||| || ||||||| |||
Sbjct 597 TGACCTAATGTTACGAGATTATCCTCGTCTAAAAGAGGAGTTTAGGATGAT 647
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23810985678
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5