BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930478
Length=899
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24093.1 | Symbols: | Paired amphipathic helix (PAH2) super... 558 3e-158
> AT3G24093.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily
protein | chr3:8701322-8702466 REVERSE LENGTH=1145
Length=1145
Score = 558 bits (302), Expect = 3e-158
Identities = 670/838 (80%), Gaps = 64/838 (8%)
Strand=Plus/Plus
Query 59 TAAAACTCCCC-ACTAGTTACTCTCGGGAGGAGTTTGAGAGAGC-TTGCGAGTTCGTGAA 116
||||||||||| || | || ||| | | | |||||| || |||| ||| |||||||||||
Sbjct 188 TAAAACTCCCCAACGA-TTGCTCGCAGAAAGAGTTTAAGCGAGCGTTG-GAGTTCGTGAA 245
Query 117 GAAAGTAAAAGAGATTGATGAAGAACAAAACCACAGAGGAATCTTCAC-TCAATATGTC- 174
|||||||||||||||||||||| || ||||||||||||||||||| | || |||| |
Sbjct 246 GAAAGTAAAAGAGATTGATGAAAAAGGAAACCACAGAGGAATCTTC-CTTCGATAT-ACT 303
Query 175 ACTGCGATGAAACTTTATCGA-TCTGGATCTTTGAAC-ATGGTCGAGGTCAAAAACAGAA 232
||||| ||||| ||||| | | ||||||||||||| | | ||||| ||||||||||||
Sbjct 304 ACTGCAATGAAGCTTTA-CTATTCTGGATCTTTGAGCGA-AGTCGATCTCAAAAACAGAA 361
Query 233 TCACGACTATTTTCAAGAACTGCGACGTTTTGCTCGATGGCTTTTATCGGATTA-TGAAA 291
||||||||||||||||||||||||||||||||||||||| |||| |||| ||| || ||
Sbjct 362 TCACGACTATTTTCAAGAACTGCGACGTTTTGCTCGATGCCTTTGATCG-ATTTCTGGAA 420
Query 292 GATTCGGATTTG-GATTCTCTTCGAGACCA--TATT-GTT-ATT----GA-TCTTAAACG 341
|||||| ||| | ||||| || | | | | || ||| || || | |||||||
Sbjct 421 GATTCGAATTCCAG-TTCTCGTCAAAAGGAAGTTTTTGTTGATCCAAAGAATGTTAAACG 479
Query 342 AATGGTTGAGTTCTTAAAGGCGTTGAGGAAAGAGTCTGAAAG-A-TTACGTCTAGGGTTT 399
||| |||||||||||| ||||||| || ||| ||| || | ||| || || | ||
Sbjct 480 AATAAAGGAGTTCTTAAAGTCGTTGAG-AA-GAGACTGCGAGGAATTATGTGGAGTGCTT 537
Query 400 TTAGAGGCTTTCGTGAGATTCAAGGAACATAAAGATG-GACA-AGTTCTGAATGGA-GAA 456
|||||||||||||||| |||||||||||||| |||| | || | || | || | | ||
Sbjct 538 ATAGAGGCTTTCGTGAGGTTCAAGGAACATAACGATGTG-CAGATTT-TAAAAG-ATGAT 594
Query 457 GTTGACCTGATGTTACGAAATTACCCTTTTCTGAAAGAAGAATTTAGGATGATCCTACTC 516
|||||||| ||||||||| |||| ||| ||| ||||| || ||||||||||||||||||
Sbjct 595 GTTGACCTAATGTTACGAGATTATCCTCGTCTAAAAGAGGAGTTTAGGATGATCCTACTC 654
Query 517 GAGAATGGTATAGTACAAGATGAAAAACGAGATGAGATTACGTTTGATAGA-GAGGATGA 575
|| | ||| || |||||||||| |||||||||||||| ||| || || ||||| ||
Sbjct 655 GACCACGGTTTAATACAAGATGAGAAACGAGATGAGATGACGCGTGGG-GAAGAGGACGA 713
Query 576 GATGTTCGAAAAA-GACATGTACTTTCATTCTATAGAATCAGCAATTAAGTTTGCGGCGG 634
| ||||| ||| | || |||||||||||| | |||||||| || ||||||||||||| ||
Sbjct 714 GCTGTTC-AAAGATGATATGTACTTTCATGCCATAGAATCGGCCATTAAGTTTGCGGTGG 772
Query 635 CGGAGGAGGATAAAAAGAGGAAGACGCCGCCGGCGGGTGTTTATGGAGCCATGAGACGGT 694
||||||| ||| ||| ||| || | || |||||||||||||||||| |||||||
Sbjct 773 CGGAGGA---TAAT--GAG-AAGCCG--GA-GGTGGGTGTTTATGGAGCCATTAGACGGT 823
Query 695 TATATGCACAACGGCGTAGACCA-TTGCCACGAGGATTCATGAGAGATCCGAAACTTGCG 753
| || |||||| || ||| | |||||||||||| |||||| |||||||||||||| |
Sbjct 824 TTTACAAACAACGACGCAGAA-AGTTGCCACGAGGAATCATGAAAGATCCGAAACTTG-G 881
Query 754 -GT-ACGAAGAGATTT-ATCAACTTTGCAGTGGAAGCACAACGAGTTGCTCAAGAAGAAG 810
|| | ||||| |||| | ||| ||||||| ||||| ||||||||||||||||||| | |
Sbjct 882 AGTTA-GAAGA-ATTTTACCAAATTTGCAGAGGAAGTACAACGAGTTGCTCAAGAACA-G 938
Query 811 AACAGAAGAAAGTTGCTTAAGAAAGTGC-AAAAGGTGAATGAATCATTGGTTGTTTTT 867
|||| ||| | |||| ||||||||| ||||| |||||||||||||||||||||||
Sbjct 939 AACA-AAG----TCGCTTGAGAAAGTGCGAAAAG-TGAATGAATCATTGGTTGTTTTT 990
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43904644478
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5