BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930488

Length=250
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G01350.1 | Symbols:  | Zinc finger (CCCH-type/C3HC4-type RIN...   124    3e-28


> AT1G01350.1 | Symbols:  | Zinc finger (CCCH-type/C3HC4-type RING 
finger) family protein | chr1:136124-138162 FORWARD LENGTH=1400
Length=1400

 Score =  124 bits (67),  Expect = 3e-28
 Identities = 79/85 (93%), Gaps = 0/85 (0%)
 Strand=Plus/Plus

Query  158   AGCATCACACGAAGAACAAGAAGTGCTTTGTGTGCAACCAACCAACACTCGGGTTTTTCA  217
             |||||||||||||||||||||||||||||||||| |||||||||||| | ||| ||||||
Sbjct  1084  AGCATCACACGAAGAACAAGAAGTGCTTTGTGTGTAACCAACCAACAATGGGGATTTTCA  1143

Query  218   ATGCAGCCCATGAAATCAAGAAGAG  242
             ||||||| ||||| |||||||||||
Sbjct  1144  ATGCAGCACATGAGATCAAGAAGAG  1168



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11360511274


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5