BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930491

Length=485
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G24060.1 | Symbols:  | Plant self-incompatibility protein S1...   721    0.0  


> AT3G24060.1 | Symbols:  | Plant self-incompatibility protein 
S1 family | chr3:8689589-8690032 REVERSE LENGTH=444
Length=444

 Score =  721 bits (390),  Expect = 0.0
 Identities = 427/445 (96%), Gaps = 2/445 (0%)
 Strand=Plus/Plus

Query  21   ATGAACACTCCAAAAACAATCATTCTTCTTCTGCTTATGCTTATCGCCATCTCCTTAACG  80
            |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  1    ATGAACACTCGAAAAACAATCATTCTTCTTCTGTTTATGCTTATCGCCATCTCCTTAACG  60

Query  81   ATCATCTTCACGTTGATACTTCAACCACAAACTATGTTTCTAGGAGAAGAATTCGACGTG  140
            ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct  61   ATCATCTTCACGTTGATGCTTCAGCCACAAACTATGTTTCTAGGAGAAGAATTCGACGTG  120

Query  141  CGTGTGATCAACAGCTTCAGAGACAACTCGTCCCTCCCTCTAGTGATTTGGTGCACTTCG  200
            ||||||||||||||||||||||||||||| || ||||||||||| || ||||||||||||
Sbjct  121  CGTGTGATCAACAGCTTCAGAGACAACTCTTCTCTCCCTCTAGTTATCTGGTGCACTTCG  180

Query  201  CCGCAAGGAGATCTCGGTGGTCGTGCGCTTCAAGAAGGAGACGACTTCGAATGGACGGCC  260
            |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct  181  CCGCAAGGAGATCTCGGTGGTCGTGCGCTTCAAGAAGGTGATGACTTCGAATGGACGGCC  240

Query  261  AAGATCGATTTGTGGTCGTGGATGGCAGAGTACACATGTACAATGAAATGGAATTCGAAG  320
            ||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||| |||
Sbjct  241  AAGATCGATTTGTGGTCATGGATGGCAGAGTACACATGTACAATGAAGTGGGATTCAAAG  300

Query  321  AGG-AAGAGGTTCGAGGCGTTTAAGGTTTCTAGAGACAGCAATAGATGTGGATCTACTAA  379
            ||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  AGGAAACA-GTTCGAGGCGTTTAAGGTTTCTAGAGACAGCAATAGATGTGGATCTACTAA  359

Query  380  GAAGTGTTCTTGGTCCGTTAGAGAAGATGGATTTTATTTTAGTAGTGATGAGGTTTATTG  439
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  360  GAAGTGTTCTTGGTCCGTTAGAGAAGATGGATTTTATTTTAGTAGTGATGAGGTTTATTG  419

Query  440  GACCAAAGATTTTTCTTGGTTATAA  464
            |||||| ||||||||||||||||||
Sbjct  420  GACCAAGGATTTTTCTTGGTTATAA  444



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23107707620


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5