BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930504
Length=1285
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23950.1 | Symbols: | F-box family protein | chr3:8652908-8... 1024 0.0
AT3G23970.1 | Symbols: | F-box family protein | chr3:8660447-8... 870 0.0
> AT3G23950.1 | Symbols: | F-box family protein | chr3:8652908-8654164
REVERSE LENGTH=1257
Length=1257
Score = 1024 bits (554), Expect = 0.0
Identities = 1030/1254 (82%), Gaps = 56/1254 (4%)
Strand=Plus/Plus
Query 30 CCAGAAGTGACATTGGTCAACGTCTTGGTGCGATTTCCACTGAAGAGTATCGCGCGATTC 89
|||||| |||| || | || || ||||||||| ||||| ||||||| |||| |||||
Sbjct 13 CCAGAATTGACCTT--TGAA-GTTTTGGTGCGACTTCCATTGAAGAGCCTCGCAAGATTC 69
Query 90 AGAACAGTGAGCAAAGAATGGAAATTGTTAATCGATTCAGACTTCTTCAGAGATCT-CTA 148
||| || || |||||||||||||| || | ||||| || || |||||| ||||| | ||
Sbjct 70 AGATCAATGTGCAAAGAATGGAAACTGGTCATCGACTCCGAATTCTTCCGAGAT-TGCTT 128
Query 149 CATCTCTCTGAACTCATCTTCCTCAATCTCATGGTCAATCATTCAAACGAAACCTCA-AA 207
||| |||| || | ||||||||| |||||||||||||||| ||||||| |||||| ||
Sbjct 129 CATGTCTCACAA--C-TCTTCCTCAGTCTCATGGTCAATCATCCAAACGAGACCTCACAA 185
Query 208 AGCTGACACTTGAAATCGTTGGCCACCATGGATGCGAAAGATGGGGACTTTCTCGTTCTC 267
| |||||||||||||||||||| |||||||||||| ||| |||||||||| |||||||||
Sbjct 186 A-CTGACACTTGAAATCGTTGGTCACCATGGATGCAAAACATGGGGACTTACTCGTTCTC 244
Query 268 CTGGATCTTTAGTAAGTTTCTTTGCAGAGA-CACCAATCAATAAACTA-AATGTCTTAGC 325
| ||||||||||| ||||||||||| |||| || |||||| |||||| || ||||||||
Sbjct 245 CCGGATCTTTAGTGAGTTTCTTTGCCGAGACCA-CAATCAGGAAACTACAA-GTCTTAGC 302
Query 326 TTGTACAGATGGGTTGGT-C-TCAGTTTGTGCAGAAACTAGTGATGGGTCTCCTATGTAT 383
|||||| ||||||||||| | || ||| | |||| || | | ||| |||||||||||
Sbjct 303 TTGTACCGATGGGTTGGTCCTTC--TTTACGTAGAATCTTGCGTTGGAACTCCTATGTAT 360
Query 384 TACATTGGAAACCCTTTGTTGCAGGAATGGTTTCGAATCCCTCAACC-TCC----T---- 434
||| |||| || |||||||| || || |||||||||||||||| || ||| |
Sbjct 361 TACGTTGGTAATCCTTTGTTTCAAGAGTGGTTTCGAATCCCTC-TCCGTCCTAAATACAC 419
Query 435 TTC-CGTAATTTTGAGAGATTTCGAAAGCACGAGCGTTTTAGCGACAGTGGATTAGTTAC 493
||| | ||| |||||| ||| | || ||||||||||| |||||||||||||| |||||
Sbjct 420 TTCTCAAAATGTTGAGAAATTAAGGAACCACGAGCGTTTCAGCGACAGTGGATTGGTTAC 479
Query 494 AAAGATG-AAGAATGGTGTCGTTGTGAGTTACAAGATTGTGTGGTTG-TTGACT--CA-T 548
||||||| || | |||| | ||||||||||||||| ||||||||||| | | || || |
Sbjct 480 AAAGATGCAA-AGTGGTATTGTTGTGAGTTACAAGGTTGTGTGGTTGATCG-CTCACACT 537
Query 549 CCTGCT-AAGGTTGAGTTTATGATTTACTCATCTGATACA-GGGACTTGGGATA-GACGA 605
|||| || || || ||| ||||||||||||| | ||| |||| ||||| | | |
Sbjct 538 TTTGCTCAA-GTCGATTTTGCGATTTACTCATCTAACACAGGGGA-ATGGGAAATTA-AA 594
Query 606 AATGTGACTTGTGTCCATACTG-CTATGTGGACTAGTCGGGACAAGTCGATTGCTTTGAA 664
|||||||||||| | ||| ||| |||| ||| ||||| ||||||| |||||||| ||
Sbjct 595 AATGTGACTTGTCTTCATTCTGCCTAT-TGGTTTAGTCATCACAAGTCCATTGCTTTAAA 653
Query 665 TGGGATTCTTCATTGGCTTTCCAATCTCACCAGTTCTATTATCGCATATGATTTCTATGG 724
|||||||||||||||||||||||| |||||| ||||| || | || || |||||||||||
Sbjct 654 TGGGATTCTTCATTGGCTTTCCAACCTCACCGGTTCTTTTTTAGCTTACGATTTCTATGG 713
Query 725 AGGTCATGATGATG-GTTTTTGTATCATACATTTCCCTGGTGTTGGAAAAGATGATGAGT 783
||||||| |||||| | | | ||||||| ||||||| | | |||||||||| | ||||
Sbjct 714 AGGTCATCATGATGCG-TGTAGTATCATTTATTTCCCCGATAATGGAAAAGATTACGAGT 772
Query 784 TACGGCGTTTTCGAAGAACCTTTACAACCTCGGAAGGGTCCATTGTGTATTTCAACGAGT 843
||| ||||||||| ||||| | || |||||||||||||| |||||||||||||||||||
Sbjct 773 TACCGCGTTTTCGGAGAACAATCACTACCTCGGAAGGGTCTATTGTGTATTTCAACGAGT 832
Query 844 TCCTTGAGAATGTAAACCGCACATTACGGGTTTGGAGGCTGGTCAAGTACACTGATGGTC 903
| || ||| | |||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 833 TTGGTGGGAACGCAAACCGCAAAGTACGGGTTTGGAGGCTGGTCAAGTACACTGATGGTC 892
Query 904 CTGAGGCGTGGCAGCTCTTTTGGGAAGTCAGCTTGGTGTCTTTGATGGAG-TCAGGTATC 962
||||||||||||||||||||||||||| |||||||| |||| ||| || | |||||||
Sbjct 893 CTGAGGCGTGGCAGCTCTTTTGGGAAGCCAGCTTGGCGTCTGTGACCAAGCT-AGGTATC 951
Query 963 AATTA-TATCCCTGTGGTAATGCATCCTTTGAACTCTGAGATCATTTACTTCTGGAGCAG 1021
|||| | |||| ||||| |||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 952 GATTACT-TCCCGGTGGTGATGCATCCTTTGAAGTCTGAGATCATCTACTTGTGGAGCAG 1010
Query 1022 GAACAAGAAAGGTCTGATCTTGTTTAACTTGAGGACACAAGTGTTTAGTCTTCACAAGGA 1081
|||||||||||| || ||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1011 AAACAAGAAAGGTATGGTCTTGTTTAACTTGAGGACGCATGTGTTTAGTCTTCACAAGGA 1070
Query 1082 AACTGAAGACGTTCGTAAGTGTATGGATGGTTGCGTTTTAAGTTTTAACCGGTGCAGCGA 1141
| | ||||||| | |||||||||||||||||| || || |||||| |||||| |||
Sbjct 1071 ATCCGAAGACGAGAGGAAGTGTATGGATGGTTGCACCTTGAGCTTTAACTGGTGCAACGA 1130
Query 1142 GTATATGGAGAGCATAT-ATACATACTTTCTCTC-ATCATTTCAAAATGGTCCTAACCAT 1199
||||||||||| | | | ||| ||||||| || | ||| |||||| ||||||||||| |
Sbjct 1131 GTATATGGAGACCGT-TCATAGATACTTT-TCCCCATCGTTTCAAGGTGGTCCTAACCTT 1188
Query 1200 CTCCTCTTTTCACAGTATGTTTTCCCTCGTTGGCTG-CATCATCTCCCTGGTCC 1252
|||||| ||||||||||||| ||||||||||| || | | ||||||| ||||
Sbjct 1189 CTCCTCGCTTCACAGTATGTTCTCCCTCGTTGGTTGTCC-CGTCTCCCTCGTCC 1241
> AT3G23970.1 | Symbols: | F-box family protein | chr3:8660447-8661688
REVERSE LENGTH=1242
Length=1242
Score = 870 bits (471), Expect = 0.0
Identities = 1018/1272 (80%), Gaps = 78/1272 (6%)
Strand=Plus/Plus
Query 30 CCAGAAGTGACATTGGTCAACGTCTTGGTGCGATTTCCACTGAAGAGTATCGCGCGATTC 89
|||||| |||| || | || || ||||||||| ||||| ||||||| |||| |||||
Sbjct 13 CCAGAATTGACCTT--TGAA-GTTTTGGTGCGACTTCCATTGAAGAGCCTCGCAAGATTC 69
Query 90 AGAACAGTGAGCAAAGAATGGAAATTGTTAATCGATTCAGACTTCTTCAGAGATCT-CTA 148
||| |||| || |||||||||||| || | ||||| || || |||||| ||||| | ||
Sbjct 70 AGATCAGTTAGGAAAGAATGGAAACTGGTCATCGACTCCGAATTCTTCCGAGAT-TGCTT 128
Query 149 CATCTCTCTGAACTCATCTTCCTCAATCTCATGGTCAATCATTCAAACGAAACCTCA-AA 207
||| |||| || | ||||||||| |||||||||||||||| ||||||| |||||| ||
Sbjct 129 CATGTCTCACAA--C-TCTTCCTCAGTCTCATGGTCAATCATCCAAACGAGACCTCACAA 185
Query 208 AGCTGACACTTGAAATCGTTGGCCACCATGGATGCGAAAGATGGGGACTTTCTCGTTCTC 267
| |||||||||||||||||||| |||||||||||| ||| |||||||||| |||||||||
Sbjct 186 A-CTGACACTTGAAATCGTTGGTCACCATGGATGCAAAACATGGGGACTTACTCGTTCTC 244
Query 268 CTGGATCTTTAGTAAGTTTCTTTGCAGAGA-CACCAATCAATAAACTA-AATGTCTTAGC 325
| ||||||||||| |||||||||| || | || ||||||| | |||| | ||||||||
Sbjct 245 CAGGATCTTTAGTGGGTTTCTTTGCCGACACCA-CAATCAAGAGACTACGA-GTCTTAGC 302
Query 326 TTGTACAGATGGGTTGGT-CTCAGTTTGTGCAGAAACTAG-TGATGGGTCTCCTATGTAT 383
|||||| ||||||||||| || | ||| |||||||||| | |||| |||| ||| ||
Sbjct 303 TTGTACCGATGGGTTGGTCCTTA-TTTACACAGAAACTAGCT-ATGGAACTCCAATGCAT 360
Query 384 TACATTGGAAACCCTTTGTTGCAGGAATGGTTTCGAATCCCTCAACC-TC---C-T-T-T 436
||| |||| || ||| |||| || ||||||| || |||||||| || || | | | |
Sbjct 361 TACGTTGGTAATCCTCTGTTTCAAGAATGGTGTCCAATCCCTCTCCCTTCTTACTTCTAT 420
Query 437 CCG-TAA-TTTTGAGAGATTTCGAAAGCACGAGCGTTTTAGCGACAGTGGATTAGTTACA 494
| || | |||||||| | || || ||| ||||||| | |||||||| ||| |||| |
Sbjct 421 TTGCAAAGTGTTGAGAGAATACGTAATCACCAGCGTTTCAACGACAGTGCATTGGTTATA 480
Query 495 AAGATGAAGAATGGTGTCGTTGTGAGTTACAAGATTGTGTGGTTGTTGACT--C-ATCCT 551
|||||| ||| ||||| |||||||||||||||| ||||||||||||| || | || |
Sbjct 481 AAGATGCAGAGTGGTGCCGTTGTGAGTTACAAGGTTGTGTGGTTGTTCCCTCGCAATAGT 540
Query 552 GCTAA-GGTTGAGTTTATGATTTACTCATCTGATACAGGGACT-TGGGATAG-ACGAAAT 608
| || | || ||| ||||||||||||||||||| || | | ||||| || |||| |
Sbjct 541 AC-AACCATCGACTTTTTGATTTACTCATCTGATACTGGCA-TGTGGGA-AGCTCGAATT 597
Query 609 GTGACTTGTGTCCATAC-TGCTATGTGGACTAGTCGGGACAAGTCGATTGCTTTGAATGG 667
| ||||||| | ||| | | || | ||| ||||| ||||| ||||||||||||||||
Sbjct 598 GCGACTTGTCTTCATTCTTCCT-TCTGGTTTAGTCATCACAAGCCGATTGCTTTGAATGG 656
Query 668 GATTCTTCATTGGCTTTCCAATCTCACCAGTTCTATTATCGCATATGATTTCTATGGAGG 727
||||||||||||||||| |||| ||| || |||| || | || || ||||||||||||||
Sbjct 657 GATTCTTCATTGGCTTTGCAATTTCAGCACTTCTTTTGTAGCTTACGATTTCTATGGAGG 716
Query 728 TCATGATG---ATGGTTTTTGTATCATA-CATTTCCCTG-GTGTTGGAAAAGATGATG-- 780
|||||||| ||| | | ||||||| | |||||||| || || |||||||||||
Sbjct 717 TCATGATGATTATGCATGTCATATCATATC-TTTCCCTGATTG-TGAAAAAGATGATGAT 774
Query 781 -AGTTACGGCGTTTTCGAAGAACCTT-TACAACCTCGGAAGGGTCCATTGTGTATTTCAA 838
|||||||||||||| | ||||| || | | |||||||| ||||| ||||| || |||||
Sbjct 775 CAGTTACGGCGTTTTAGGAGAACATTGT-CGACCTCGGATGGGTCTATTGTCTACTTCAA 833
Query 839 CGAGTTCCTTGAGAATGTAAACCGCACATTACGGGTTTGGAGGCTGGTCAAGTACACTGA 898
|||||| |||||| | |||||| | |||||| |||||||||||||||||||||||||
Sbjct 834 CGAGTTTGGTGAGAACGGAAACCGAAGATTACGTGTTTGGAGGCTGGTCAAGTACACTGG 893
Query 899 TGGTCCTGAGGCGTGGCAGCTCTTTTGGGAAGTCAGCTTGGTGTCTTTGATGGAG-TCAG 957
||||||||||||||||||||||||||||||||||||||||| |||| ||| || | ||
Sbjct 894 TGGTCCTGAGGCGTGGCAGCTCTTTTGGGAAGTCAGCTTGGCGTCTGTGACCAAGCT-AG 952
Query 958 GTATCAATTA-TATCCCTGTGGTAATGCATCCTTTGAACTCTGAGATCATTTACTTCTGG 1016
||||| |||| | |||| ||||| |||||||||||||| ||||||||||| ||||| |||
Sbjct 953 GTATCGATTACT-TCCCGGTGGTGATGCATCCTTTGAAGTCTGAGATCATCTACTTGTGG 1011
Query 1017 AGCAGGAACAAGAAAGGTCTGATCTTGTTTAACTTGAGGACACAA-GTGTTTAGTCTTCA 1075
||||| |||||||||||| || | ||||||||||||||||| || ||||||||||||||
Sbjct 1012 AGCAGAAACAAGAAAGGTATGGTTTTGTTTAACTTGAGGACT-AATGTGTTTAGTCTTCA 1070
Query 1076 CAAGGAAACTGAAGACGTT-CGTAAGTGTATGGATGGTTGCGTTTTAAGTTTTAACCGGT 1134
||||||| | || |||| | |||||||||||||||||| || || |||||| |||
Sbjct 1071 CAAGGAATCCGAGGACGAGACC-AAGTGTATGGATGGTTGCACCTTGAGCTTTAACAGGT 1129
Query 1135 GCAGCGAGTATATGGAGAGCATATATACATACTTTCTCTCATCATTTCAAAATGGTCCTA 1194
|||||||||||||||||| | ||| |||| || || | |||||||
Sbjct 1130 GCAGCGAGTATATGGAGA-C-TATC--CATAA---CT---ATGGT--------GGTCCTA 1171
Query 1195 ACCATCTCCTCTTTTCACAGTATGTT-TTCCCTCGTTGGCTGCATCATCTCCCTGGTCCG 1253
|| |||||||| ||||||||||||| |||| |||||||||||| | ||||||| |||||
Sbjct 1172 ACTATCTCCTCGCTTCACAGTATGTTCTTCC-TCGTTGGCTGCACCGTCTCCCTCGTCCG 1230
Query 1254 AATCCTACTTAG 1265
| ||| |||||
Sbjct 1231 CAGCCTTCTTAG 1242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63202486155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5