BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930507

Length=285
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G23960.1 | Symbols:  | F-box and associated interaction doma...   128    3e-29


> AT3G23960.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr3:8657736-8658944 FORWARD LENGTH=1209
Length=1209

 Score =  128 bits (69),  Expect = 3e-29
 Identities = 154/192 (80%), Gaps = 18/192 (9%)
 Strand=Plus/Plus

Query  64    TTATACTTTGCTGGTATGATTGATACAAATGAAATTGTGTTCTTGCCTTCCCAG-CCAGA  122
             ||||||||||| || ||||||| ||||| ||||||||||   |||  || || | |||||
Sbjct  1027  TTATACTTTGCAGGAATGATTGGTACAAGTGAAATTGTG---TTG--TT-CC-GCCCAGA  1079

Query  123   TTATGACC-C-TTATGTTGTCTACTACAATATCGAGAGAAAGACGATGATAAGAGTTGAA  180
             | | | || | ||  ||| |||||||||||||||| ||||| ||||| | |||||||| |
Sbjct  1080  TGA-G-CCTCTTTGCGTTTTCTACTACAATATCGATAGAAACACGATCAAAAGAGTTGGA  1137

Query  181   ATCCAAGGAACCGAAGCCTTTAAGGTTAGTGGATTCCACATCTTTCTAAACCATGTAGAG  240
             |||| ||||   ||||| ||||| | || |   || | ||||||||||||||||||||||
Sbjct  1138  ATCCGAGGATTAGAAGCGTTTAA-G-TA-T---TTTCGCATCTTTCTAAACCATGTAGAG  1191

Query  241   AACGTGAAGCTT  252
             ||||||||||||
Sbjct  1192  AACGTGAAGCTT  1203



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13119882489


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5