BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930513

Length=392
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G24120.2 | Symbols:  | Homeodomain-like superfamily protein ...   331    3e-90
  AT4G13640.2 | Symbols: UNE16 | Homeodomain-like superfamily pro...   147    1e-34


> AT3G24120.2 | Symbols:  | Homeodomain-like superfamily protein 
| chr3:8705636-8708315 REVERSE LENGTH=1353
Length=1353

 Score =  331 bits (179),  Expect = 3e-90
 Identities = 309/364 (85%), Gaps = 39/364 (11%)
 Strand=Plus/Plus

Query  56   gggTTACCAAGTCACTGGAAGCTCTACGTGCTCAGATGGAAGTCCAAAGAAGACTACACG  115
            |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct  575  GGGTTACCAAGTCAC-CGAAGCTCTACGTGCTCAGATGGAAGTCCAAAGAAGACTACACG  633

Query  116  AGCAATTGGAG---G------TGCAACGGAGACTCCAGCTAAGGATAGAGGCACAAG-AA  165
            | |||||||||   |      |||||||||| |||||||| |||||||||||||||| ||
Sbjct  634  ATCAATTGGAGTATGGGCAGGTGCAACGGAGGCTCCAGCTGAGGATAGAGGCACAAGGAA  693

Query  166  AAGTACCTGCAATCAATTCTTGAAAAAGCTTGCAAG-C-T--G-C--------TGCT--T  210
            || ||||||||||| ||||||||||||||||||||| | |  | |        ||||  |
Sbjct  694  AA-TACCTGCAATCGATTCTTGAAAAAGCTTGCAAGGCCTTTGACGAGCAAGCTGCTACT  752

Query  211  TTA-CTGGGCTTGAGGCTGCTAGG-AAGAGCTATCAGAGCACTTACGGACTATTTAAAAT  268
            ||  |||| ||||||||||||||| |||||||||||||||  | | |  | ||  ||| |
Sbjct  753  TTTGCTGGACTTGAGGCTGCTAGGGAAGAGCTATCAGAGC--T-A-GC-C-ATC-AAAGT  805

Query  269  TCTTCAATAGCTCTCAAGGAACAACAGTCCCGTACTTCCGATGCAATAAAAATGATGATG  328
             || ||||||||||||||||||| |||||||||||||| ||||||| ||| |||||||||
Sbjct  806  -CTCCAATAGCTCTCAAGGAACATCAGTCCCGTACTTC-GATGCAACAAAGATGATGATG  863

Query  329  ATGCCATCTTTGTCAGAGCTTGCAGTAGCAGTAGACAACAATAAACAACATCACAACCAA  388
            |||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct  864  ATGCCATCGTTGTCAGAGCTTGCAGTAGCAATAGACAACAA-AAACAACATCACAACCAA  922

Query  389  CTGT  392
            ||||
Sbjct  923  CTGT  926


> AT4G13640.2 | Symbols: UNE16 | Homeodomain-like superfamily protein 
| chr4:7936606-7938645 REVERSE LENGTH=1294
Length=1294

 Score =  147 bits (79),  Expect = 1e-34
 Identities = 130/153 (85%), Gaps = 10/153 (7%)
 Strand=Plus/Plus

Query  58   GTTACCAAGTCACTGGAAGCTCTACGTGCTCAGATGGAAGTCCAAAGAAGACTACACGAG  117
            ||||||| |||||| |||||| | ||||| ||||||||||||||||||||||||||||||
Sbjct  546  GTTACCAGGTCACT-GAAGCTTTGCGTGCCCAGATGGAAGTCCAAAGAAGACTACACGAG  604

Query  118  CAATT-G-G-A---G--G-TGCAACGGAGACTCCAGCTAAGGATAGAGGCACAAGAAAAG  168
            ||| | | | |   |  | ||||| || |||||||| ||||||| ||||||||||  |||
Sbjct  605  CAACTAGAGTATACGCAGGTGCAAAGGCGACTCCAGTTAAGGATCGAGGCACAAGGGAAG  664

Query  169  TACCTGCAATCAATTCTTGAAAAAGCTTGCAAG  201
            ||||||||||||||||| || ||||||||||||
Sbjct  665  TACCTGCAATCAATTCTAGAGAAAGCTTGCAAG  697



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18498531632


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5