BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930517
Length=277
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24280.1 | Symbols: SMAP2 | small acidic protein 2 | chr3:87... 239 1e-62
> AT3G24280.1 | Symbols: SMAP2 | small acidic protein 2 | chr3:8798934-8799401
REVERSE LENGTH=468
Length=468
Score = 239 bits (129), Expect = 1e-62
Identities = 231/278 (83%), Gaps = 16/278 (6%)
Strand=Plus/Plus
Query 1 CACGCAAAGGAAGCGAAGCGATGGATAGATATTGGCG-ACGAGACCCGAGGAGGCCGATG 59
||||||||||||||||| ||||||||||||||||| | || |||||||| ||||||||||
Sbjct 8 CACGCAAAGGAAGCGAAACGATGGATAGATATTGG-GAACAAGACCCGATGAGGCCGATG 66
Query 60 ATGCAGTATGACTTTCTGAATGAGATGGAATATTCAGGATCCTCGATGCCTATGCAGATG 119
|| | |||||||||| ||||||||| ||| |||||| |||||||||||||||||||
Sbjct 67 GTGTACCGTGACTTTCTGGGTGAGATGGAGTATCCAGGATACTCGATGCCTATGCAGATG 126
Query 120 GAGATCGATGATGATGACTTCTACCCCATGG--A-GTTGTTTGAAGGTGGAGG-ACTTCT 175
||||||||||| || |||||| ||||||| | | |||||||| |||||| | |||
Sbjct 127 GAGATCGATGAAGACGACTTCGGGCCCATGGATATGCAGTTTGAAGTTGGAGGAATTTC- 185
Query 176 ATCCTCCCCAAA-GAAGCCTGATTACA-CCATTTTCTTTC-ACAAATTCGAGGATGATTT 232
| ||| |||| |||||| || ||| | | |||| ||| |||| ||||||||||||||
Sbjct 186 ACCCT-TTCAAATGAAGCCCGAAGACAGCGA-TTTC-TTCAACAAGTTCGAGGATGATTT 242
Query 233 TGATGATTCCGATATCAATT-GATTTCGATTATT-TCT 268
|||||||||||||||||||| | ||||||| ||| |||
Sbjct 243 TGATGATTCCGATATCAATTAG-TTTCGATCATTCTCT 279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12717740497
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5