BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930518
Length=1531
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24290.1 | Symbols: AMT1;5 | ammonium transporter 1;5 | chr3... 2252 0.0
AT3G24300.1 | Symbols: AMT1;3, ATAMT1;3 | ammonium transporter ... 1692 0.0
> AT3G24290.1 | Symbols: AMT1;5 | ammonium transporter 1;5 | chr3:8801400-8802890
REVERSE LENGTH=1491
Length=1491
Score = 2252 bits (1219), Expect = 0.0
Identities = 1400/1490 (94%), Gaps = 2/1490 (0%)
Strand=Plus/Plus
Query 21 ATGTCGGGAGCTATAACTTGCTCTGCAGCTGATCTCTCTGCCCTACTCGGCCCCAATGCA 80
||||| |||||||| ||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct 1 ATGTCAGGAGCTATTACTTGCTCTGCGGCTGATCTCTCAGCCCTACTCGGCCCAAATGCC 60
Query 81 ACCGCGGCGGCTAACTACATTTGCGGCCAATTGGGTACCGTTAACAACAAGTTTACCGAT 140
|| || |||||| |||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 61 ACGGCAGCGGCTGACTACATTTGCGGCCAGTTGGGTTCCGTTAACAACAAGTTTACCGAT 120
Query 141 GCAGCCTACGCTATAGACAACACTTACCTCCTCTTCTCCGCCTATCTCGTCTTCGCGATG 200
||||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||||
Sbjct 121 GCAGCCTACGCTATAGACAACACGTACCTCCTCTTCTCTGCCTATCTTGTCTTTGCGATG 180
Query 201 CAGCTTGGTTTCGCTATGCTTTGTGCTGGCTCCGTTAGAGCCAAGAACACGATGAACATC 260
||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 CAGCTCGGCTTCGCTATGCTTTGTGCTGGCTCCGTTAGAGCTAAGAACACGATGAACATC 240
Query 261 ATGCTCACTAATGTCCTTGATGCTGCAGCTGGAGGACTCTTCTACTATCTCTTTGGTTAT 320
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 241 ATGCTCACTAATGTCCTTGATGCTGCAGCCGGAGGACTCTTCTACTACCTCTTTGGTTAT 300
Query 321 GCCTTTGCCTTTGGCGAATCCTCTGATGGATTCATCGGAAGACACAACTTTGGTCTTAAA 380
|| ||||||||||| |||||||| ||||||||||| ||||||||||||||||||||| ||
Sbjct 301 GCATTTGCCTTTGGTGAATCCTCCGATGGATTCATTGGAAGACACAACTTTGGTCTTCAA 360
Query 381 AACTTTCCGACTCTCACTTCGGATTACTCCTTCTTCCTCTACCAATGGGCCTTTGCTATC 440
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||
Sbjct 361 AACTTTCCGACTCTCACCTCGGATTACTCCTTCTTCCTCTACCAATGGGCGTTTGCAATC 420
Query 441 GCCGCCGCTGGAATCACCAGCGGTTCGATTGCCGAGAGGACTAAGTTCGTGGCGTATTTG 500
|| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 421 GCAGCCGCTGGAATCACCAGCGGCTCCATTGCCGAGAGGACTAAGTTCGTGGCGTATTTG 480
Query 501 ATATACTCTTCTTTTTTGACCGGGTTTGTTTACCCGGTCGTTTCTCACTGGTTCTGGTCT 560
||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 481 ATATACTCTTCTTTTTTGACCGGGTTTGTTTACCCAGTTGTCTCTCACTGGTTCTGGTCT 540
Query 561 CCGGACGGATGGGCTAGTCCGTTTCGTTCAGAAGACCGTTTGTTTGGCACCGGAGCCATC 620
||||| |||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 541 CCGGATGGATGGGCTAGTCCCTTCCGTTCAGAAGACCGTTTGTTTGGCACTGGAGCCATC 600
Query 621 GACTTTGCGGGGTCAGGTGTTGTTCACATGGTTGGTGGTATCGCTGGATTATGGGGAGCC 680
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 601 GACTTTGCTGGGTCAGGTGTTGTTCACATGGTTGGTGGTATCGCAGGATTATGGGGTGCC 660
Query 681 CTTATCGAAGGTCCTCGGATTGGCCGGTTCCCTGATGGGGGTCATGCTATTGCTCTGCGC 740
||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 661 CTTATTGAAGGCCCTCGGATTGGTCGGTTTCCTGATGGGGGTCATGCTATTGCTCTGCGA 720
Query 741 GGCCACTCTGCCTCACTCGTCGTCTTAGGGACCTTCCTTCTCTGGTTTGGTTGGTATGGG 800
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 721 GGCCACTCTGCCTCACTCGTCGTCTTAGGGACCTTCCTTCTCTGGTTTGGTTGGTACGGG 780
Query 801 TTCAACCCTGGTTCCTTCACCAAGATACTCATTCCTTACAATTCTGGATCCAACTATGGC 860
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 781 TTCAACCCTGGTTCCTTCACCAAGATACTCATTCCCTACAATTCTGGTTCCAACTATGGC 840
Query 861 CAATGGAGTGGAATAGGCCGCACGGCGGTTACAACTACACTCTCGGGATGCACAGCGGCT 920
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 841 CAATGGAGTGGAATAGGCCGCACCGCGGTTACAACTACACTCTCGGGATGCACAGCGGCT 900
Query 921 CTAACCACCCTCTTCGGAAAACGTCTCCTATCAGGCCACTGGAACGTAACCGATGTTTGC 980
|||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 901 CTAACCACACTCTTCGGAAAACGTCTCCTATCAGGCCACTGGAACGTAACTGACGTTTGC 960
Query 981 AACGGTTTACTTGGCGGGTTTGCGGCCATAACCGCAGGTTGCTCCGTGGTTGATCCATGG 1040
||||| ||||| || ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 961 AACGGGTTACTCGGAGGGTTTGCGGCCATAACGGCAGGTTGCTCTGTGGTTGATCCATGG 1020
Query 1041 GCAGCGATCGTATGCGGCTTCATGGCTTCCCTCGTCCTTATCGGATGCAACAAGCTCGCG 1100
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1021 GCAGCGATCGTATGTGGCTTCGTGGCTTCCCTCGTCCTTATCGGATGCAACAAGCTCGCA 1080
Query 1101 GAGCTTTTAAAATACGATGATCCGCTAGAGGCCGCACAACTACACGGAGGGTGTGGTGCT 1160
||||| |||||||| || ||||| || |||||||||||||||||||||||||||||||||
Sbjct 1081 GAGCTCTTAAAATATGACGATCCACTTGAGGCCGCACAACTACACGGAGGGTGTGGTGCT 1140
Query 1161 TGGGGTTTGATATTTGTAGGACTATTTGCAAAAGAGAAGTATGTAAATGAGGTTTACGGC 1220
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1141 TGGGGTTTGATATTTGTAGGACTGTTTGCAAAAGAGAAGTATATAAATGAGGTTTACGGC 1200
Query 1221 GCAAGCCCGGGAAGGCACTACGGACTATTTATGGGAGGAGGAGGGAAGCTATTGGGAGCA 1280
|| ||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1201 GCGAGCCCAGGAAGGCACTACGGGCTATTTATGGGCGGAGGAGGGAAGCTATTGGGAGCA 1260
Query 1281 CAATTGGTCCAAATAATTGTGATTGTTGGATGGGTTAGTGCCACAATGGGAACACTCTTC 1340
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 CAACTGGTTCAAATAATTGTGATTGTTGGATGGGTTAGTGCCACAATGGGAACACTCTTC 1320
Query 1341 TTTATGCTTAAAAAGCTCAATTTGCTTAGGATCTCGAATG-AGGATGAGATGCAAGGAAT 1399
|| || || ||||||||||||||||||||||||||| | | || |||| |||| ||||||
Sbjct 1321 TTCATCCTCAAAAAGCTCAATTTGCTTAGGATCTCGGA-GCAGCATGAAATGCGAGGAAT 1379
Query 1400 GGATATAGCACGTCACGGTGGTTTTGCTTATATCTACCATGATAATGATGATGACTCCAT 1459
|||| ||||| |||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1380 GGATTTAGCAGGTCATGGTGGTTTTGCTTATATCTACCATGATAATGATGATGATTCCAT 1439
Query 1460 TCGAGTGCCTGGATCTCCAATACCTCGTGCGCCTAACCCTCCAGACGTTT 1509
| ||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1440 TGGAGTGCCTGGATCTCCAGTACCTCGTGCGCCTAACCCTCCAGCCGTTT 1489
> AT3G24300.1 | Symbols: AMT1;3, ATAMT1;3 | ammonium transporter
1;3 | chr3:8805631-8807388 REVERSE LENGTH=1758
Length=1758
Score = 1692 bits (916), Expect = 0.0
Identities = 1339/1543 (87%), Gaps = 30/1543 (2%)
Strand=Plus/Plus
Query 1 TCTCTCTCAAG-TCTCT-AAGCATGTCGGGAGCTATAACTTGCTCTGCAGCTGATCTCTC 58
|||||||| || ||||| || |||||| ||||| ||||| |||||||| || |||||| |
Sbjct 14 TCTCTCTC-AGCTCTCTCAAACATGTCAGGAGCAATAACATGCTCTGCGGCCGATCTCGC 72
Query 59 TGCCCTACTCGGCCCCAATGCAACCGCGGCGGCTAACTACATTTGCGGCCAATTGGGTAC 118
||||||| |||||||| || || |||||||| ||||||||||||||||||| || ||
Sbjct 73 CACCCTACTTGGCCCCAACGCCACGGCGGCGGCCGACTACATTTGCGGCCAATTAGGCAC 132
Query 119 CGTTAACAACAAGTTTACCGATGCAGCCTACGCTATAGACAACACTTACCTCCTCTTCTC 178
||||||||||||||| ||||||||||||| ||| ||||||||||| ||||||||||||||
Sbjct 133 CGTTAACAACAAGTTCACCGATGCAGCCTTCGCCATAGACAACACCTACCTCCTCTTCTC 192
Query 179 CGCCTATCTCGTCTTCGCGATGCAGCTTGGTTTCGCTATGCTTTGTGCTGGCTCCGTTAG 238
||||| || |||||||| |||||||| || |||||||||||||||||||| || |||||
Sbjct 193 TGCCTACCTTGTCTTCGCCATGCAGCTCGGCTTCGCTATGCTTTGTGCTGGTTCTGTTAG 252
Query 239 AGCCAAGAACACGATGAACATCATGCTCACTAATGTCCTTGATGCTGCAGCTGGAGGACT 298
||||||||| ||||||||||||||||| || ||||||||||| |||||||| ||||||||
Sbjct 253 AGCCAAGAATACGATGAACATCATGCTTACCAATGTCCTTGACGCTGCAGCCGGAGGACT 312
Query 299 CTTCTACTATCTCTTTGGTTATGCCTTTGCCTTTGGCGAATCCTCTGATGGATTCATCGG 358
||||||||||||||||||||| |||||||||||||| | |||||| || || ||||| ||
Sbjct 313 CTTCTACTATCTCTTTGGTTACGCCTTTGCCTTTGGAGGATCCTCCGAAGGGTTCATTGG 372
Query 359 AAGACACAACTTTGGTCTTAAAAACTTTCCGACTCTCACTTCGGATTACTCCTTCTTCCT 418
|||||||||||||| ||||| | |||||||||||| ||| | |||||||| ||||||||
Sbjct 373 AAGACACAACTTTGCTCTTAGAGACTTTCCGACTCCCACAGCTGATTACTCTTTCTTCCT 432
Query 419 CTACCAATGGGCCTTTGCTATCGCCGCCGCTGGAATCACCAGCGGTTCGATTGCCGAGAG 478
|||||||||||| || || ||||| |||||||||||||| || |||||||| || |||||
Sbjct 433 CTACCAATGGGCGTTCGCAATCGCGGCCGCTGGAATCACAAGTGGTTCGATCGCAGAGAG 492
Query 479 GACTAAGTTCGTGGCGTATTTGATATACTCTTCTTTTTTGACCGGGTTTGTTTACCCGGT 538
|||| |||||||||| || ||||||||||||||||| || ||||| ||||||||||||||
Sbjct 493 GACTCAGTTCGTGGCTTACTTGATATACTCTTCTTTCTTAACCGGATTTGTTTACCCGGT 552
Query 539 CGTTTCTCACTGGTTCTGGTCTCCGGACGGATGGGCTAGTCCGTTTCGTTCA---GAAGA 595
|| ||||||||||| ||||| ||||| |||||||| ||||| ||||||||| || ||
Sbjct 553 TGTCTCTCACTGGTTTTGGTCCCCGGATGGATGGGCCAGTCCCTTTCGTTCAGCGGATGA 612
Query 596 CCGTTTGTTTGGCACCGGAGCCATCGACTTTGCGGGGTCAGGTGTTGTTCACATGGTTGG 655
||||||||| ||||||||||||| |||||||| || || ||||||||||||||||||||
Sbjct 613 TCGTTTGTTTAGCACCGGAGCCATTGACTTTGCTGGCTCCGGTGTTGTTCACATGGTTGG 672
Query 656 TGGTATCGCTGGATTATGGGGAGCCCTTATCGAAGGTCCTCGGATTGGCCGGTTCCCTG- 714
||| || || || |||||||| || ||||| ||||||||||| ||| ||||| | |
Sbjct 673 TGGCATAGCAGGTTTATGGGGTGCTCTTATTGAAGGTCCTCGTCGTGGTCGGTT-CGAGA 731
Query 715 ATGGGGGTCATGCTATTGCTCTGCGCGGCCACTCTGCCTCACTCGTCGTCTTAGGGACCT 774
| || |||| ||||||||||||||||||||||||||||| || || |||||||| ||||
Sbjct 732 AAGGTGGTCGCGCTATTGCTCTGCGCGGCCACTCTGCCTCGCTAGTAGTCTTAGGAACCT 791
Query 775 TCCTTCTCTGGTTTGGTTGGTATGGGTTCAACCCTGGTTCCTTCACCAAGATACTCATTC 834
|||| || |||||||| |||||||| |||||||| ||||||||||| ||||||||| |||
Sbjct 792 TCCTCCTATGGTTTGGATGGTATGGTTTCAACCCCGGTTCCTTCACTAAGATACTCGTTC 851
Query 835 CTTACAATTCTGGATCCAACTATGGCCAATGGAGTGGAATAGGCCGCACGGCGGTT-ACA 893
| || |||||||| |||||||| ||||||||||| ||||| ||||| || |||||| ||
Sbjct 852 CGTATAATTCTGGTTCCAACTACGGCCAATGGAGCGGAATCGGCCGTACAGCGGTTAAC- 910
Query 894 ACTACACTCTCGGGATGCACAGCGGCTCTAACCACCCTCTTCGGAAAACGTCTCCTATCA 953
|| |||||||| ||||||||||| ||||||||||| ||||| || |||||||||||||||
Sbjct 911 ACCACACTCTCAGGATGCACAGCAGCTCTAACCACACTCTTTGGTAAACGTCTCCTATCA 970
Query 954 GGCCACTGGAACGTAACCGATGTTTGCAACGGTTTACTTGGCGGGTTTGCGGCCATAACC 1013
||||||||||||||||| || ||||||||||| ||||| || ||||||||||||||||||
Sbjct 971 GGCCACTGGAACGTAACGGACGTTTGCAACGGGTTACTCGGTGGGTTTGCGGCCATAACC 1030
Query 1014 GCAGGTTGCTCCGTGGTTGATCCATGGGCAGCGATCGTATGCGGCTTCATGGCTTCCCTC 1073
|||||||||||||| || || |||||||||||||| || ||||||||||||||||| ||
Sbjct 1031 GCAGGTTGCTCCGTCGTAGAGCCATGGGCAGCGATTGTGTGCGGCTTCATGGCTTCTGTC 1090
Query 1074 GTCCTTATCGGATGCAACAAGCTCGCGGAGCTTTTAAAATACGATGATCCGCTAGAGGCC 1133
||||||||||||||||||||||||||||||||| || |||| |||||||| || |||||
Sbjct 1091 GTCCTTATCGGATGCAACAAGCTCGCGGAGCTTGTACAATATGATGATCCACTCGAGGCA 1150
Query 1134 GCACAACTACACGGAGGGTGTGGTGCTTGGGGTTTGATATTTGTAGGACTATTTGCAAAA 1193
|| |||||||| ||||||||||| || ||||| |||||||| |||||| | ||||| |||
Sbjct 1151 GCCCAACTACATGGAGGGTGTGGCGCGTGGGGGTTGATATTCGTAGGATTGTTTGCCAAA 1210
Query 1194 GAGAAGTATGTAAATGAGGTTTACGGCGCAAGCCCGGGAAGGC-ACTACGGACTATTTAT 1252
||||||||| |||| |||||||| ||||| | ||||||||||| | || |||||||||||
Sbjct 1211 GAGAAGTATCTAAACGAGGTTTATGGCGCCACCCCGGGAAGGCCA-TATGGACTATTTAT 1269
Query 1253 GGGAGGAGGAGGGAAGCTATTGGGAGCACAATTGGTCCAAATAATTGTGATTGTTGGATG 1312
||| |||||||||||||| ||||||||||||||||| |||||| |||||||||| |||||
Sbjct 1270 GGGCGGAGGAGGGAAGCTGTTGGGAGCACAATTGGTTCAAATACTTGTGATTGTAGGATG 1329
Query 1313 GGTTAGTGCCACAATGGGAACACTCTTCTTTATGCTTAAAAAGCTCAATTTGCTTAGGAT 1372
|||||||||||||||||||||||||||||| || || |||| ||||||| ||||||||||
Sbjct 1330 GGTTAGTGCCACAATGGGAACACTCTTCTTCATCCTCAAAAGGCTCAATCTGCTTAGGAT 1389
Query 1373 CTCGAATG-AGGATGAGATGCAAGGAATGGATAT-AGCACGTCACGGTGGTTTTGCTTAT 1430
|||| | | || |||| |||||||| |||||||| | ||||||||||||| |||||||||
Sbjct 1390 CTCGGA-GCAGCATGAAATGCAAGGGATGGATATGA-CACGTCACGGTGGCTTTGCTTAT 1447
Query 1431 ATCTACCATGATAATGATGATGACTC-CATTCGAGTG---CCTGGATCTCCAATACCTCG 1486
||||||||||||||||||||||| || ||| ||||| ||||||||||| | |||||
Sbjct 1448 ATCTACCATGATAATGATGATGAGTCTCATA-GAGTGGATCCTGGATCTCCTTTCCCTCG 1506
Query 1487 -TGC-GCCTAAC-CCTCCA-GACGTTTAATTTTCAAGATTTTT 1525
| | || || | ||||| | |||||||||||||| |||||
Sbjct 1507 AT-CAGC-TA-CTCCTCCTCG-CGTTTAATTTTCAAC-TTTTT 1544
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75551820225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5