BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg930518 Length=1531 Score E Sequences producing significant alignments: (Bits) Value AT3G24290.1 | Symbols: AMT1;5 | ammonium transporter 1;5 | chr3... 2252 0.0 AT3G24300.1 | Symbols: AMT1;3, ATAMT1;3 | ammonium transporter ... 1692 0.0 > AT3G24290.1 | Symbols: AMT1;5 | ammonium transporter 1;5 | chr3:8801400-8802890 REVERSE LENGTH=1491 Length=1491 Score = 2252 bits (1219), Expect = 0.0 Identities = 1400/1490 (94%), Gaps = 2/1490 (0%) Strand=Plus/Plus Query 21 ATGTCGGGAGCTATAACTTGCTCTGCAGCTGATCTCTCTGCCCTACTCGGCCCCAATGCA 80 ||||| |||||||| ||||||||||| ||||||||||| |||||||||||||| ||||| Sbjct 1 ATGTCAGGAGCTATTACTTGCTCTGCGGCTGATCTCTCAGCCCTACTCGGCCCAAATGCC 60 Query 81 ACCGCGGCGGCTAACTACATTTGCGGCCAATTGGGTACCGTTAACAACAAGTTTACCGAT 140 || || |||||| |||||||||||||||| |||||| ||||||||||||||||||||||| Sbjct 61 ACGGCAGCGGCTGACTACATTTGCGGCCAGTTGGGTTCCGTTAACAACAAGTTTACCGAT 120 Query 141 GCAGCCTACGCTATAGACAACACTTACCTCCTCTTCTCCGCCTATCTCGTCTTCGCGATG 200 ||||||||||||||||||||||| |||||||||||||| |||||||| ||||| |||||| Sbjct 121 GCAGCCTACGCTATAGACAACACGTACCTCCTCTTCTCTGCCTATCTTGTCTTTGCGATG 180 Query 201 CAGCTTGGTTTCGCTATGCTTTGTGCTGGCTCCGTTAGAGCCAAGAACACGATGAACATC 260 ||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 181 CAGCTCGGCTTCGCTATGCTTTGTGCTGGCTCCGTTAGAGCTAAGAACACGATGAACATC 240 Query 261 ATGCTCACTAATGTCCTTGATGCTGCAGCTGGAGGACTCTTCTACTATCTCTTTGGTTAT 320 ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 241 ATGCTCACTAATGTCCTTGATGCTGCAGCCGGAGGACTCTTCTACTACCTCTTTGGTTAT 300 Query 321 GCCTTTGCCTTTGGCGAATCCTCTGATGGATTCATCGGAAGACACAACTTTGGTCTTAAA 380 || ||||||||||| |||||||| ||||||||||| ||||||||||||||||||||| || Sbjct 301 GCATTTGCCTTTGGTGAATCCTCCGATGGATTCATTGGAAGACACAACTTTGGTCTTCAA 360 Query 381 AACTTTCCGACTCTCACTTCGGATTACTCCTTCTTCCTCTACCAATGGGCCTTTGCTATC 440 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||| Sbjct 361 AACTTTCCGACTCTCACCTCGGATTACTCCTTCTTCCTCTACCAATGGGCGTTTGCAATC 420 Query 441 GCCGCCGCTGGAATCACCAGCGGTTCGATTGCCGAGAGGACTAAGTTCGTGGCGTATTTG 500 || |||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 421 GCAGCCGCTGGAATCACCAGCGGCTCCATTGCCGAGAGGACTAAGTTCGTGGCGTATTTG 480 Query 501 ATATACTCTTCTTTTTTGACCGGGTTTGTTTACCCGGTCGTTTCTCACTGGTTCTGGTCT 560 ||||||||||||||||||||||||||||||||||| || || |||||||||||||||||| Sbjct 481 ATATACTCTTCTTTTTTGACCGGGTTTGTTTACCCAGTTGTCTCTCACTGGTTCTGGTCT 540 Query 561 CCGGACGGATGGGCTAGTCCGTTTCGTTCAGAAGACCGTTTGTTTGGCACCGGAGCCATC 620 ||||| |||||||||||||| || |||||||||||||||||||||||||| ||||||||| Sbjct 541 CCGGATGGATGGGCTAGTCCCTTCCGTTCAGAAGACCGTTTGTTTGGCACTGGAGCCATC 600 Query 621 GACTTTGCGGGGTCAGGTGTTGTTCACATGGTTGGTGGTATCGCTGGATTATGGGGAGCC 680 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 601 GACTTTGCTGGGTCAGGTGTTGTTCACATGGTTGGTGGTATCGCAGGATTATGGGGTGCC 660 Query 681 CTTATCGAAGGTCCTCGGATTGGCCGGTTCCCTGATGGGGGTCATGCTATTGCTCTGCGC 740 ||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 661 CTTATTGAAGGCCCTCGGATTGGTCGGTTTCCTGATGGGGGTCATGCTATTGCTCTGCGA 720 Query 741 GGCCACTCTGCCTCACTCGTCGTCTTAGGGACCTTCCTTCTCTGGTTTGGTTGGTATGGG 800 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 721 GGCCACTCTGCCTCACTCGTCGTCTTAGGGACCTTCCTTCTCTGGTTTGGTTGGTACGGG 780 Query 801 TTCAACCCTGGTTCCTTCACCAAGATACTCATTCCTTACAATTCTGGATCCAACTATGGC 860 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 781 TTCAACCCTGGTTCCTTCACCAAGATACTCATTCCCTACAATTCTGGTTCCAACTATGGC 840 Query 861 CAATGGAGTGGAATAGGCCGCACGGCGGTTACAACTACACTCTCGGGATGCACAGCGGCT 920 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 841 CAATGGAGTGGAATAGGCCGCACCGCGGTTACAACTACACTCTCGGGATGCACAGCGGCT 900 Query 921 CTAACCACCCTCTTCGGAAAACGTCTCCTATCAGGCCACTGGAACGTAACCGATGTTTGC 980 |||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 901 CTAACCACACTCTTCGGAAAACGTCTCCTATCAGGCCACTGGAACGTAACTGACGTTTGC 960 Query 981 AACGGTTTACTTGGCGGGTTTGCGGCCATAACCGCAGGTTGCTCCGTGGTTGATCCATGG 1040 ||||| ||||| || ||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 961 AACGGGTTACTCGGAGGGTTTGCGGCCATAACGGCAGGTTGCTCTGTGGTTGATCCATGG 1020 Query 1041 GCAGCGATCGTATGCGGCTTCATGGCTTCCCTCGTCCTTATCGGATGCAACAAGCTCGCG 1100 |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1021 GCAGCGATCGTATGTGGCTTCGTGGCTTCCCTCGTCCTTATCGGATGCAACAAGCTCGCA 1080 Query 1101 GAGCTTTTAAAATACGATGATCCGCTAGAGGCCGCACAACTACACGGAGGGTGTGGTGCT 1160 ||||| |||||||| || ||||| || ||||||||||||||||||||||||||||||||| Sbjct 1081 GAGCTCTTAAAATATGACGATCCACTTGAGGCCGCACAACTACACGGAGGGTGTGGTGCT 1140 Query 1161 TGGGGTTTGATATTTGTAGGACTATTTGCAAAAGAGAAGTATGTAAATGAGGTTTACGGC 1220 ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| Sbjct 1141 TGGGGTTTGATATTTGTAGGACTGTTTGCAAAAGAGAAGTATATAAATGAGGTTTACGGC 1200 Query 1221 GCAAGCCCGGGAAGGCACTACGGACTATTTATGGGAGGAGGAGGGAAGCTATTGGGAGCA 1280 || ||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 1201 GCGAGCCCAGGAAGGCACTACGGGCTATTTATGGGCGGAGGAGGGAAGCTATTGGGAGCA 1260 Query 1281 CAATTGGTCCAAATAATTGTGATTGTTGGATGGGTTAGTGCCACAATGGGAACACTCTTC 1340 ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1261 CAACTGGTTCAAATAATTGTGATTGTTGGATGGGTTAGTGCCACAATGGGAACACTCTTC 1320 Query 1341 TTTATGCTTAAAAAGCTCAATTTGCTTAGGATCTCGAATG-AGGATGAGATGCAAGGAAT 1399 || || || ||||||||||||||||||||||||||| | | || |||| |||| |||||| Sbjct 1321 TTCATCCTCAAAAAGCTCAATTTGCTTAGGATCTCGGA-GCAGCATGAAATGCGAGGAAT 1379 Query 1400 GGATATAGCACGTCACGGTGGTTTTGCTTATATCTACCATGATAATGATGATGACTCCAT 1459 |||| ||||| |||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1380 GGATTTAGCAGGTCATGGTGGTTTTGCTTATATCTACCATGATAATGATGATGATTCCAT 1439 Query 1460 TCGAGTGCCTGGATCTCCAATACCTCGTGCGCCTAACCCTCCAGACGTTT 1509 | ||||||||||||||||| |||||||||||||||||||||||| ||||| Sbjct 1440 TGGAGTGCCTGGATCTCCAGTACCTCGTGCGCCTAACCCTCCAGCCGTTT 1489 > AT3G24300.1 | Symbols: AMT1;3, ATAMT1;3 | ammonium transporter 1;3 | chr3:8805631-8807388 REVERSE LENGTH=1758 Length=1758 Score = 1692 bits (916), Expect = 0.0 Identities = 1339/1543 (87%), Gaps = 30/1543 (2%) Strand=Plus/Plus Query 1 TCTCTCTCAAG-TCTCT-AAGCATGTCGGGAGCTATAACTTGCTCTGCAGCTGATCTCTC 58 |||||||| || ||||| || |||||| ||||| ||||| |||||||| || |||||| | Sbjct 14 TCTCTCTC-AGCTCTCTCAAACATGTCAGGAGCAATAACATGCTCTGCGGCCGATCTCGC 72 Query 59 TGCCCTACTCGGCCCCAATGCAACCGCGGCGGCTAACTACATTTGCGGCCAATTGGGTAC 118 ||||||| |||||||| || || |||||||| ||||||||||||||||||| || || Sbjct 73 CACCCTACTTGGCCCCAACGCCACGGCGGCGGCCGACTACATTTGCGGCCAATTAGGCAC 132 Query 119 CGTTAACAACAAGTTTACCGATGCAGCCTACGCTATAGACAACACTTACCTCCTCTTCTC 178 ||||||||||||||| ||||||||||||| ||| ||||||||||| |||||||||||||| Sbjct 133 CGTTAACAACAAGTTCACCGATGCAGCCTTCGCCATAGACAACACCTACCTCCTCTTCTC 192 Query 179 CGCCTATCTCGTCTTCGCGATGCAGCTTGGTTTCGCTATGCTTTGTGCTGGCTCCGTTAG 238 ||||| || |||||||| |||||||| || |||||||||||||||||||| || ||||| Sbjct 193 TGCCTACCTTGTCTTCGCCATGCAGCTCGGCTTCGCTATGCTTTGTGCTGGTTCTGTTAG 252 Query 239 AGCCAAGAACACGATGAACATCATGCTCACTAATGTCCTTGATGCTGCAGCTGGAGGACT 298 ||||||||| ||||||||||||||||| || ||||||||||| |||||||| |||||||| Sbjct 253 AGCCAAGAATACGATGAACATCATGCTTACCAATGTCCTTGACGCTGCAGCCGGAGGACT 312 Query 299 CTTCTACTATCTCTTTGGTTATGCCTTTGCCTTTGGCGAATCCTCTGATGGATTCATCGG 358 ||||||||||||||||||||| |||||||||||||| | |||||| || || ||||| || Sbjct 313 CTTCTACTATCTCTTTGGTTACGCCTTTGCCTTTGGAGGATCCTCCGAAGGGTTCATTGG 372 Query 359 AAGACACAACTTTGGTCTTAAAAACTTTCCGACTCTCACTTCGGATTACTCCTTCTTCCT 418 |||||||||||||| ||||| | |||||||||||| ||| | |||||||| |||||||| Sbjct 373 AAGACACAACTTTGCTCTTAGAGACTTTCCGACTCCCACAGCTGATTACTCTTTCTTCCT 432 Query 419 CTACCAATGGGCCTTTGCTATCGCCGCCGCTGGAATCACCAGCGGTTCGATTGCCGAGAG 478 |||||||||||| || || ||||| |||||||||||||| || |||||||| || ||||| Sbjct 433 CTACCAATGGGCGTTCGCAATCGCGGCCGCTGGAATCACAAGTGGTTCGATCGCAGAGAG 492 Query 479 GACTAAGTTCGTGGCGTATTTGATATACTCTTCTTTTTTGACCGGGTTTGTTTACCCGGT 538 |||| |||||||||| || ||||||||||||||||| || ||||| |||||||||||||| Sbjct 493 GACTCAGTTCGTGGCTTACTTGATATACTCTTCTTTCTTAACCGGATTTGTTTACCCGGT 552 Query 539 CGTTTCTCACTGGTTCTGGTCTCCGGACGGATGGGCTAGTCCGTTTCGTTCA---GAAGA 595 || ||||||||||| ||||| ||||| |||||||| ||||| ||||||||| || || Sbjct 553 TGTCTCTCACTGGTTTTGGTCCCCGGATGGATGGGCCAGTCCCTTTCGTTCAGCGGATGA 612 Query 596 CCGTTTGTTTGGCACCGGAGCCATCGACTTTGCGGGGTCAGGTGTTGTTCACATGGTTGG 655 ||||||||| ||||||||||||| |||||||| || || |||||||||||||||||||| Sbjct 613 TCGTTTGTTTAGCACCGGAGCCATTGACTTTGCTGGCTCCGGTGTTGTTCACATGGTTGG 672 Query 656 TGGTATCGCTGGATTATGGGGAGCCCTTATCGAAGGTCCTCGGATTGGCCGGTTCCCTG- 714 ||| || || || |||||||| || ||||| ||||||||||| ||| ||||| | | Sbjct 673 TGGCATAGCAGGTTTATGGGGTGCTCTTATTGAAGGTCCTCGTCGTGGTCGGTT-CGAGA 731 Query 715 ATGGGGGTCATGCTATTGCTCTGCGCGGCCACTCTGCCTCACTCGTCGTCTTAGGGACCT 774 | || |||| ||||||||||||||||||||||||||||| || || |||||||| |||| Sbjct 732 AAGGTGGTCGCGCTATTGCTCTGCGCGGCCACTCTGCCTCGCTAGTAGTCTTAGGAACCT 791 Query 775 TCCTTCTCTGGTTTGGTTGGTATGGGTTCAACCCTGGTTCCTTCACCAAGATACTCATTC 834 |||| || |||||||| |||||||| |||||||| ||||||||||| ||||||||| ||| Sbjct 792 TCCTCCTATGGTTTGGATGGTATGGTTTCAACCCCGGTTCCTTCACTAAGATACTCGTTC 851 Query 835 CTTACAATTCTGGATCCAACTATGGCCAATGGAGTGGAATAGGCCGCACGGCGGTT-ACA 893 | || |||||||| |||||||| ||||||||||| ||||| ||||| || |||||| || Sbjct 852 CGTATAATTCTGGTTCCAACTACGGCCAATGGAGCGGAATCGGCCGTACAGCGGTTAAC- 910 Query 894 ACTACACTCTCGGGATGCACAGCGGCTCTAACCACCCTCTTCGGAAAACGTCTCCTATCA 953 || |||||||| ||||||||||| ||||||||||| ||||| || ||||||||||||||| Sbjct 911 ACCACACTCTCAGGATGCACAGCAGCTCTAACCACACTCTTTGGTAAACGTCTCCTATCA 970 Query 954 GGCCACTGGAACGTAACCGATGTTTGCAACGGTTTACTTGGCGGGTTTGCGGCCATAACC 1013 ||||||||||||||||| || ||||||||||| ||||| || |||||||||||||||||| Sbjct 971 GGCCACTGGAACGTAACGGACGTTTGCAACGGGTTACTCGGTGGGTTTGCGGCCATAACC 1030 Query 1014 GCAGGTTGCTCCGTGGTTGATCCATGGGCAGCGATCGTATGCGGCTTCATGGCTTCCCTC 1073 |||||||||||||| || || |||||||||||||| || ||||||||||||||||| || Sbjct 1031 GCAGGTTGCTCCGTCGTAGAGCCATGGGCAGCGATTGTGTGCGGCTTCATGGCTTCTGTC 1090 Query 1074 GTCCTTATCGGATGCAACAAGCTCGCGGAGCTTTTAAAATACGATGATCCGCTAGAGGCC 1133 ||||||||||||||||||||||||||||||||| || |||| |||||||| || ||||| Sbjct 1091 GTCCTTATCGGATGCAACAAGCTCGCGGAGCTTGTACAATATGATGATCCACTCGAGGCA 1150 Query 1134 GCACAACTACACGGAGGGTGTGGTGCTTGGGGTTTGATATTTGTAGGACTATTTGCAAAA 1193 || |||||||| ||||||||||| || ||||| |||||||| |||||| | ||||| ||| Sbjct 1151 GCCCAACTACATGGAGGGTGTGGCGCGTGGGGGTTGATATTCGTAGGATTGTTTGCCAAA 1210 Query 1194 GAGAAGTATGTAAATGAGGTTTACGGCGCAAGCCCGGGAAGGC-ACTACGGACTATTTAT 1252 ||||||||| |||| |||||||| ||||| | ||||||||||| | || ||||||||||| Sbjct 1211 GAGAAGTATCTAAACGAGGTTTATGGCGCCACCCCGGGAAGGCCA-TATGGACTATTTAT 1269 Query 1253 GGGAGGAGGAGGGAAGCTATTGGGAGCACAATTGGTCCAAATAATTGTGATTGTTGGATG 1312 ||| |||||||||||||| ||||||||||||||||| |||||| |||||||||| ||||| Sbjct 1270 GGGCGGAGGAGGGAAGCTGTTGGGAGCACAATTGGTTCAAATACTTGTGATTGTAGGATG 1329 Query 1313 GGTTAGTGCCACAATGGGAACACTCTTCTTTATGCTTAAAAAGCTCAATTTGCTTAGGAT 1372 |||||||||||||||||||||||||||||| || || |||| ||||||| |||||||||| Sbjct 1330 GGTTAGTGCCACAATGGGAACACTCTTCTTCATCCTCAAAAGGCTCAATCTGCTTAGGAT 1389 Query 1373 CTCGAATG-AGGATGAGATGCAAGGAATGGATAT-AGCACGTCACGGTGGTTTTGCTTAT 1430 |||| | | || |||| |||||||| |||||||| | ||||||||||||| ||||||||| Sbjct 1390 CTCGGA-GCAGCATGAAATGCAAGGGATGGATATGA-CACGTCACGGTGGCTTTGCTTAT 1447 Query 1431 ATCTACCATGATAATGATGATGACTC-CATTCGAGTG---CCTGGATCTCCAATACCTCG 1486 ||||||||||||||||||||||| || ||| ||||| ||||||||||| | ||||| Sbjct 1448 ATCTACCATGATAATGATGATGAGTCTCATA-GAGTGGATCCTGGATCTCCTTTCCCTCG 1506 Query 1487 -TGC-GCCTAAC-CCTCCA-GACGTTTAATTTTCAAGATTTTT 1525 | | || || | ||||| | |||||||||||||| ||||| Sbjct 1507 AT-CAGC-TA-CTCCTCCTCG-CGTTTAATTTTCAAC-TTTTT 1544 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75551820225 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5