BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930528
Length=1070
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24350.2 | Symbols: SYP32 | syntaxin of plants 32 | chr3:88... 1140 0.0
> AT3G24350.2 | Symbols: SYP32 | syntaxin of plants 32 | chr3:8837608-8839702
FORWARD LENGTH=1511
Length=1511
Score = 1140 bits (617), Expect = 0.0
Identities = 756/822 (92%), Gaps = 14/822 (2%)
Strand=Plus/Plus
Query 260 TTGCAAAGAGGACATCAGTTTTTGATGATCCGACTCAGGAGATACAAGAGCTGACAGTAG 319
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct 412 TTGCAAAGAGGACATCAGTGTTTGATGATCCTACTCAGGAGATACAAGAGCTGACGGTAG 471
Query 320 TCATTAAGCAAGAGATCTCTGCTCTAAATACTGCTTTGCTTGACCTTCAAGTGCTT-CGT 378
|||| |||||||||||||||||||||||| ||||| || | ||||||||| || || ||
Sbjct 472 TCATCAAGCAAGAGATCTCTGCTCTAAATTCTGCTCTGGTCGACCTTCAATTG-TTCCGC 530
Query 379 AGCTCCCAGAATGGCGAAGAGAACAATTCTAGAGAC----ACATCA--ACTCACTCAACA 432
|| || ||||||| |||| ||| || ||||||||| ||| | ||||||||| ||
Sbjct 531 AGTTCTCAGAATGATGAAGGGAATAACTCTAGAGACAGGGACAAAAGTACTCACTCAGCA 590
Query 433 ACAGTTGTTGACGTTCTAAAGAATCGCCTGATGGATACTACCAAAGATTTTAAGGATGTT 492
|| |||||||||| ||||||| |||| ||||||||||||||||||| ||||||||||||
Sbjct 591 ACTGTTGTTGACGATCTAAAGTATCGTTTGATGGATACTACCAAAGAGTTTAAGGATGTT 650
Query 493 CTTACTATGAGGACCGAGAACATGAAGATCCATGAGAA-TCGAAGGCAACTCTTCTCTTC 551
||||| ||||| |||||||| |||||| ||||||| || | |||||||||||||||||||
Sbjct 651 CTTACCATGAGAACCGAGAATATGAAGGTCCATGA-AAGTAGAAGGCAACTCTTCTCTTC 709
Query 552 AAACGCTTCTAAAGAATCAACAAACCCGTTTGTTCGCCAGCGGCCTTTGGCTGCTAAGGC 611
||| ||||| ||||||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct 710 AAATGCTTCAAAAGAATCAACAAACCCATTCGTTCGCCAGCGTCCTTTGGCTGCTAAGGC 769
Query 612 TGCTGCTAGTGAATCTGCTCCTCTTCCATGGGCGAATGGGTCTTCGTCATCGTCATCTCA 671
||||||||||||||||| ||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 770 TGCTGCTAGTGAATCTGTTCCTCTTCCATGGGCAAATGGGTCTTCTTCATCTTCATCTCA 829
Query 672 GTTAGTCCCATGGAAGCAGGGAGAGGGCGAATCTTCACCATTGTTGCAGCAGAGTCAACA 731
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 830 GTTAGTCCCATGGAAGCCGGGAGAGGGAGAATCTTCACCATTGTTGCAGCAGAGTCAACA 889
Query 732 AC-A-A-CAACAGCAACAGCAGCAAATGGTCCCATTGCAAGACACATATATGCAGAGCCG 788
|| | | |||||||||||||| ||||||||||||||||||||||||||||||||| | ||
Sbjct 890 ACAACAGCAACAGCAACAGCAACAAATGGTCCCATTGCAAGACACATATATGCAGGGTCG 949
Query 789 AGCCGAAGCTCTACACAACGTTGAATCAACAATCCATGAGCTAAGCAGTATCTTCACACA 848
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 AGCAGAAGCTCTACACACCGTTGAATCAACAATCCATGAGCTAAGCAGTATCTTCACACA 1009
Query 849 ACTAGCAACCATGGTTTCTCAACAAGGGGAAATTGCAATCAGGATCGATCAAAACATGGA 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 ACTAGCAACCATGGTTTCTCAACAAGGGGAAATTGCAATCAGGATCGATCAAAACATGGA 1069
Query 909 AGATACATTAGCTAATGTGGAAGGCGCACAGAGCCAACTGGCCAGGTATCTCAACAGCAT 968
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1070 AGATACATTAGCAAATGTGGAAGGCGCACAGAGCCAACTGGCCAGGTATCTCAACAGTAT 1129
Query 969 ATCGTCAAACCGATGGCTGATGATGAAGATTTTCTTCGTACTCATTGCATTTCTCATGAT 1028
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 ATCATCAAACCGATGGCTAATGATGAAGATTTTCTTCGTACTCATTGCATTTCTCATGAT 1189
Query 1029 TTTCCTCTTCTTCGTGGCGTAAACATTGAGACTAAAAAATTG 1070
|||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1190 TTTCCTCTTCTTCGTGGCATAAACATTGAGACTAAAAA-TTG 1230
Score = 316 bits (171), Expect = 2e-85
Identities = 230/257 (89%), Gaps = 10/257 (4%)
Strand=Plus/Plus
Query 11 GAGGAAGAATAATGTCGGCAAGGCATGGGCAATCGTCGTATCGAGATCGGAC-GAAGGAA 69
||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||
Sbjct 115 GAGGAAGAATAATGTCGGCAAGGCATGGGCAATCGTCGTATCGAGATCGGAGTGACG-AA 173
Query 70 TTCTTCGATATCGTTGAGAGTCTAAGGAGATCGATTACTCCGGC---GGCG---AATATT 123
|||||| | || || |||| |||||||||||||||| ||||||| |||| |||| |
Sbjct 174 TTCTTCAAAATTGTGGAGACTCTAAGGAGATCGATTGCTCCGGCTCCGGCGGCGAATAAT 233
Query 124 GTACCGTATGGTAATAGTAGGAACGATGGTTCGAGAAGAGAGGATCTTATCAACAAATCC 183
|| ||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||
Sbjct 234 GTGCCGTATGGTAATAATCGGAACGATGGTGCGAGAAGAGAGGATCTTATCAACAAATCC 293
Query 184 GAGTTCAACAATAGAGCTTCTAAGATTGGTTTAGCTATTAATCAAACGTCGCAGAAGCTT 243
||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 294 GAGTTCAACAAGAGAGCTTCTCATATTGGTTTAGCTATTAATCAAACGTCGCAGAAGCTA 353
Query 244 TCGAAG-TTAGCGAAAC 259
|||||| || |||||||
Sbjct 354 TCGAAGCTT-GCGAAAC 369
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52409368980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5