BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930529
Length=1293
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24360.1 | Symbols: | ATP-dependent caseinolytic (Clp) prot... 1930 0.0
AT4G13360.1 | Symbols: | ATP-dependent caseinolytic (Clp) prot... 1197 0.0
> AT3G24360.1 | Symbols: | ATP-dependent caseinolytic (Clp) protease/crotonase
family protein | chr3:8839728-8842831 REVERSE
LENGTH=1393
Length=1393
Score = 1930 bits (1045), Expect = 0.0
Identities = 1203/1280 (94%), Gaps = 8/1280 (1%)
Strand=Plus/Plus
Query 1 GTGGAATTGGGAATCACAGTGATGATC-A-AG---A-CTTTGGCttctgctcgcatcttc 54
|||||||| |||||||||||||||||| | || | || ||||||||||||||||||||
Sbjct 12 GTGGAATTAGGAATCACAGTGATGATCAAGAGTTTATCTCTGGCTTCTGCTCGCATCTTC 71
Query 55 ttctctaaaacctctccatcttttcttactcccctctctaagctctctGTATCACATCGC 114
||||||| |||||||||||||||||||| |||| |||| |||||||||||||| |||||
Sbjct 72 TTCTCTAGAACCTCTCCATCTTTTCTTATTCCCTTCTCAAAGCTCTCTGTATCTCATCGT 131
Query 115 CGGAAATTCTCAGTGATGGCCAATGGAAGCGACGAGTTCGTGAAAGGAAATGTTTATCCA 174
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 132 CGGAAATTCTCAGTAATGGCCAGTGGAAGCGACGAGTTCGTGAAAGGAAATGTTTATCCA 191
Query 175 AATGGCGTTGCTTTCATCACTCTTGTTTGACCTAAAGCTCTCAACGCCATGAATCTAGAA 234
|||||||||||| |||| ||||||| | ||||||||||||||||||||||||||||||||
Sbjct 192 AATGGCGTTGCTCTCATTACTCTTGATCGACCTAAAGCTCTCAACGCCATGAATCTAGAA 251
Query 235 ATGGATTTGAAGTACAAAAGCTTGCTTGATGAATGGGAATCTGACCCTAGTGTCAAATGT 294
|||||||||||||||||||||||||||||||||||||||| ||| ||| | |||||||||
Sbjct 252 ATGGATTTGAAGTACAAAAGCTTGCTTGATGAATGGGAATATGATCCTGGAGTCAAATGT 311
Query 295 GTTGTTGTTGAAGGCAGCACACCTCGGGCCTTTTGTGCAGGGATGGATATTAAAGGAGTT 354
||||| || ||||| |||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 312 GTTGTCGTCGAAGGAAGCACATCTCGGGCCTTTTGTGCAGGAATGGATATTAAAGGAGTT 371
Query 355 GTTGCAGAGATCCTAATGGACAAAAACACGTCTCTTGTGAAAAAGGTATTTACAGCTGAA 414
|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 372 GTTGCAGAGATCCTAATGGACAAAAATACGTCTCTTGTGCAAAAGGTATTTACAGCTGAG 431
Query 415 TATAGCCTGATATGCAAGATTGCTGGATACA-AAAAGCCATATATCTCTTTAATGGATGG 473
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 432 TATAGCCTGATATGCAAGATTGCTGGATACAGAAAA-CCATATATCTCTTTAATGGATGG 490
Query 474 CATAACAATGGGATTTGGTCTAGGCCTCTCTGGACATGGTCGCTACCGCGTGATAACAGA 533
||||||||||||||||||||| || || ||||||||||| |||||||| |||||||||||
Sbjct 491 CATAACAATGGGATTTGGTCTTGGTCTTTCTGGACATGGACGCTACCGAGTGATAACAGA 550
Query 534 GAGGACGGTCCTCGCAATGCCAGAAAATGGAATCGGCTTGTTTCCGGATGTTGGATTTTC 593
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 551 GAGGACGGTCCTCGCAATGCCAGAAAATGGAATCGGCTTGTTTCCAGATGTTGGATTTTC 610
Query 594 ATATATAGCAGCTCATAGCCCTGGCGAAGGATCTGTTGGTGCTTACCTTGGTATGACTGG 653
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 611 ATATATTGCAGCTCATAGCCCTGGCGAAGGATCTGTTGGTGCTTACCTAGGTATGACTGG 670
Query 654 GAGAAGGATTTCCACACCTTCAGATGCACTGTTTGTGGGTCTTGGGACACATTATGTACC 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 GAGAAGGATTTCCACACCTTCAGATGCACTGTTTGTGGGTCTTGGGACACATTATGTACC 730
Query 714 ATCTGGAAAGCTAGGGTCACTCAAAGAAGCCATTTTGTCAGCTGACATTTCCAAGGATCC 773
||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 731 ATCTGGAAAGCTAGGTTCACTCAGAGAAGCCATTTTGTCAGCTGACCTTTCCAAGGATCC 790
Query 774 CCATCAACACATCCAAGCAACTTTATCAAATTACAGCAGTGATCCTGAATCTGAATCCCA 833
||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 791 CCAACAACACATCCAAGCAACTTTATCAAATTACAGCAGTGATCCTGAAACTGAGTCCCA 850
Query 834 CCTCAAAATGCTTTTGCCTCAGATAGAATCAGCTTTTACTGCAAGTAAGTCTGTTAAGGA 893
|||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 851 CCTCCAAATGCTTTTGCCTCAGATAGAATCAGCTTTTAGTGTAAGTAAGTCTGTTAAGGA 910
Query 894 AACTATAGAAGAGCTGAAGAAGTACCAGCAGAGCACTGAGGCTTCAGTTGCAGAATGGGC 953
||| |||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||
Sbjct 911 AACAATAGAAGAGCTGAAAAAGTTCCAGCAGAGCAGTGAGGCTTCAGTTGCAGAATGGGC 970
Query 954 TAATGAAGCACTCCAAGGCCTTGAAAAAGGTGCACCGTTTTCTCTTTACCTAACACATAA 1013
|||||||||| |||||||| |||||||||| ||||| |||||||||||||||||||| ||
Sbjct 971 TAATGAAGCAGTCCAAGGCATTGAAAAAGGGGCACCTTTTTCTCTTTACCTAACACACAA 1030
Query 1014 GTACTTCTCGAAAGTTGCTGGTGCCAAGGGTAAAACCAACAACACAATGACAACACTTAA 1073
||||||||| ||||||||| ||||||||||||||||||||||| | ||| ||||||||||
Sbjct 1031 GTACTTCTCCAAAGTTGCTTGTGCCAAGGGTAAAACCAACAACGCCATGGCAACACTTAA 1090
Query 1074 CGGTGTGATGAAAACTGAGTACCGCATTGCTCTAAGATCTGCATTGCGTAATGATTTCAC 1133
||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1091 CGGTGTGATGATAACTGAGTACCGCATTGCTCTAAGATCTGCATTGCGCAGTGATTTCAC 1150
Query 1134 TGAAGGTGTTAGAGCAGTCTTGATTGACAAGGATCAGAACCCGAAATGGAAACCAGCGAG 1193
||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||
Sbjct 1151 TGAAGGTGTTAGAGCAGTCTTGACTGACAAGGACCAGAATCCGAAATGGAAACCAGCGAG 1210
Query 1194 CTTAGACGAGGTAGATGTAACCGAAGTGGATGCTCTCTTTAAGCCATTAAGTCCTGAATT 1253
||||||||| ||||||| |||||||||||| || ||||||| ||||||||||||||||||
Sbjct 1211 CTTAGACGAAGTAGATGAAACCGAAGTGGACGCGCTCTTTATGCCATTAAGTCCTGAATT 1270
Query 1254 GGAAGAGCTAAACGTATGAA 1273
|||||||||||||||||||
Sbjct 1271 TGAAGAGCTAAACGTATGAA 1290
> AT4G13360.1 | Symbols: | ATP-dependent caseinolytic (Clp) protease/crotonase
family protein | chr4:7775128-7777895 FORWARD
LENGTH=1465
Length=1465
Score = 1197 bits (648), Expect = 0.0
Identities = 1009/1181 (85%), Gaps = 33/1181 (3%)
Strand=Plus/Plus
Query 110 ATCGCCGGAAATTCTCAGTGATGGCC--A-ATGGAAG-CGACGAGTTCGTGAAAGGAAAT 165
|||| ||||||||||||| ||||||| | ||| | ||| || ||||| |||||||||
Sbjct 106 ATCGTCGGAAATTCTCAGCGATGGCCGGAGCTGG-CGTCGATGATTTCGTTAAAGGAAAT 164
Query 166 GTTTATCCAAATGGCGTTGCTTTCATCACTCTTGTTTG-ACCTAAAGCTCTCAACGCCAT 224
|||| ||| ||||| || ||| |||||||||| | | | ||| |||||||||||||||||
Sbjct 165 GTTTTTCCGAATGGTGTCGCTCTCATCACTCTCGATCGAACC-AAAGCTCTCAACGCCAT 223
Query 225 GAATCTAGAAATGGATTTGAAGTACAAAAGCTTGCTTGATGAATGGGAATCTGACCCTAG 284
|||| |||| |||||| | ||||| |||||||| |||||||||||||||||||| || ||
Sbjct 224 GAATTTAGATATGGATATAAAGTATAAAAGCTTTCTTGATGAATGGGAATCTGATCCGAG 283
Query 285 TGTCAAATGTGTTGTTGTTGAAGGCAGCACACCTCGGGCCTTTTGTGCAGGGATGGATAT 344
|| ||||||||| | |||||||| |||||| || |||||||||||||||||||||||||
Sbjct 284 AGTGAAATGTGTTATCGTTGAAGGAAGCACATCTAGGGCCTTTTGTGCAGGGATGGATAT 343
Query 345 TAAAGGAGTTGTTGCAGAGATCCTAATGGACAAAAACACGTCTCTTGTGAAAAAGGTATT 404
||||||||||| |||||| |||| || |||||||||||| |||||||| ||||||||||
Sbjct 344 TAAAGGAGTTGCTGCAGAAATCCAAAAGGACAAAAACACACCTCTTGTGCAAAAGGTATT 403
Query 405 TACAGCTGAATATAGC-CTGATATG--CAAGATTGCTG-GATACAAAAAGCCATATATCT 460
|||||| || |||| | |||||||| ||| |||||| | ||||||||||||||||| |
Sbjct 404 TACAGCAGAGTATA-CACTGATATGTGCAA--TTGCTGCG-TACAAAAAGCCATATATTT 459
Query 461 CTTTAATGGATGGCATAACAATGGGATTTGGTCTAGGCCTCTCTGGACATGGTCGCTACC 520
| || |||||||| |||||||||||||||||||| || || |||||||||||||||||||
Sbjct 460 CATTGATGGATGGTATAACAATGGGATTTGGTCTTGGTCTTTCTGGACATGGTCGCTACC 519
Query 521 GCGTGATAACAGAGAGGACGGTCCTCGCAATGCCAGAAAATGGAATCGGCTTGTTTCCGG 580
| |||||||||||||||||||| || || ||||||||||||||||| |||||||| || |
Sbjct 520 GTGTGATAACAGAGAGGACGGTTCTTGCCATGCCAGAAAATGGAATTGGCTTGTTCCCTG 579
Query 581 ATGTTGGATTTTCATATATAGCAGCTCATAGCCCTGGCGAAGGATCTGTTGGTGCTTACC 640
|||| || ||||||||||||||||||||||||||||| | |||||||||||||||||| |
Sbjct 580 ATGTCGGGTTTTCATATATAGCAGCTCATAGCCCTGGAGGAGGATCTGTTGGTGCTTATC 639
Query 641 TTGGTATGACTGGGAGAAGGATTTCCACACCTTCAGATGCACTGTTTGTGGGTCTTGGGA 700
||||| ||||||| | |||||| ||| | || ||||| |||||||| || ||||||||||
Sbjct 640 TTGGTTTGACTGGTAAAAGGATCTCCGCGCCATCAGACGCACTGTTCGTTGGTCTTGGGA 699
Query 701 CACATTATGTACCATCTGGAAAGCTAGGGTCACTCAAAG-AAGCCATTTTGTCAGCTGAC 759
| |||||||||||||||| |||||||| ||| | |||| ||||||||||||||||| ||
Sbjct 700 CGCATTATGTACCATCTGAAAAGCTAGCTTCATT-AAAGGAAGCCATTTTGTCAGCTAAC 758
Query 760 ATTTCCAAGGATCCCCATCAACACATCCAAGCAACTTTATCAAATTACAGCAGTGATCCT 819
|||| ||||||| ||||| |||||||||||||||||||||| |||||||| |||||
Sbjct 759 CTTTCTGAGGATCCTAATCAAGACATCCAAGCAACTTTATCAAAATACAGCAGCAATCCT 818
Query 820 GAATCTGAATCCCACCTCAAAATG-CTTTTGCCTCAGATAGAATCAGCTTTTA-CTGCAA 877
|||||||| |||| |||||| | ||||||||||| ||||| ||||| |||| || |||
Sbjct 819 GAATCTGAGGCCCATCTCAAA-TCACTTTTGCCTCACATAGAGTCAGCCTTTAGCT-CAA 876
Query 878 GTAAGTCTGTTAAGGAAACTATAGAAGAGCTGAAGAAGTACCAGCAGAGCACTGAGGCTT 937
||||||| |||||||||| ||||||||||| || ||||||||||| ||||||||| |||
Sbjct 877 ATAAGTCTATTAAGGAAACAATAGAAGAGCTCAAAAAGTACCAGCAAAGCACTGAGTCTT 936
Query 938 CAGTTGCAGAATGGGCTAATGAAGCACTCCAAGGCCTTG-AAAAAGGTGCACCGTTTTCT 996
|||||| ||||||||||||||| |||||| |||| ||| ||||||| ||||| ||||||
Sbjct 937 CAGTTGTAGAATGGGCTAATGAGGCACTCAAAGGT-TTGGAAAAAGGAGCACCATTTTCT 995
Query 997 CTTTACCTAACACATAAGTACTTCTCGAAAGTTGC-TGGTGCCAAGGGTAAAACC-AACA 1054
|||||||||||||| ||||| ||||| || ||||| || ||||||| ||||| || || |
Sbjct 996 CTTTACCTAACACAAAAGTATTTCTCCAATGTTGCATG-TGCCAAGAGTAAACCCGAA-A 1053
Query 1055 ACACAATGA-CAACACTTAACGGTGTGATGAAAACTGAGTACCGCATTGCTCTAAGATCT 1113
|| ||| | |||||||||| || || |||||||||||||| |||||||| |||||||||
Sbjct 1054 ACG-AATTAGCAACACTTAATGGCGTAATGAAAACTGAGTATCGCATTGCACTAAGATCT 1112
Query 1114 GCATTGCGTAATGATTTCACTGAAGGTGTTAGAGCAGTCTTGATTGACAAGGATCAGAAC 1173
|| ||||| |||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1113 GCCCTGCGTGGTGATTTTGCTGAAGGTGTTAGAGCAGTTTTGATTGACAAGGATCAGAAT 1172
Query 1174 CCGAAATGGAAACC-AGCGAGC-TTAGACGAGGTAGATGTAACCGAAGTGGATGCTCTCT 1231
|| |||||||| || | | ||| || || |||||||| | || ||||||||| ||||| |
Sbjct 1173 CCAAAATGGAACCCGA-CAAGCATT-GAAGAGGTAGACGAAAACGAAGTGGAAGCTCTGT 1230
Query 1232 TTAAGCCATTAAGTCCTGAATTGGAAGAGCTAAACGTATGA 1272
|||| ||||||||||| ||| |||||||| |||| || |||
Sbjct 1231 TTAAACCATTAAGTCCAGAAGTGGAAGAGTTAAAAGTCTGA 1271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63604090515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5