BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930532
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24420.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1367 0.0
> AT3G24420.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr3:8862840-8864914 REVERSE LENGTH=1124
Length=1124
Score = 1367 bits (740), Expect = 0.0
Identities = 815/852 (96%), Gaps = 2/852 (0%)
Strand=Plus/Plus
Query 4 AAAACTCTTCTACTTAAGCATGGTGGTTAATCAGAAGATATCCGGCCTTGCATCCGCTAT 63
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 13 AAAACTCTTGTACTTAAGCATGGTGGTTAATCAGAAGATATCCGGCCTTGCATCCGCTAT 72
Query 64 GAACGCCAAAATCATCGGTTCAGGCGAGAGATCAATGGTCCTGGCACACGGTTTCGGAGG 123
|||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||
Sbjct 73 GAACGCCAAAATCATCGGTTCAGGAGAGAGATCGATGGTCTTGGCACACGGTTTCGGAGG 132
Query 124 CGATCAGTCGGTTTGGGACAAGATAATACCGGTCTTGTCTCAATCCTTCAAAGTTTTGGT 183
||| |||||||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 133 CGACCAGTCGGTTTGGGATAAAATAATACCGGTCTTGTCCCAATCCTTCAAAGTTTTGGT 192
Query 184 CTTTGACTGGCTTTTCTCTGGAGCCATTAAAGACCAAACTCTTTATGACCCTTCGAAGTA 243
||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 193 CTTTGACTGGCTTTTCTCTGGAGCCATTAAAGATCAAACTCTCTATGACCCTTCAAAGTA 252
Query 244 TAACTCCTTAGTCGCCTTCTCTGACGATCTCATTGCTCTTATGGAGGAGTTGAAGTTTGG 303
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 TAACTCCTTAGACGTCTTCTCTGACGATCTCATTGCTCTTATGGAGGAGTTGAAGTTTGG 312
Query 304 CCCTGTAGTGTTCGTAGGCCATTCCATGTCGGGGATGATCGGTTGTGCTGCTTCTATTAA 363
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 313 CCCTGTCGTGTTCGTAGGCCATTCCATGTCGGGGGTGATCGGTTGTGCTGCTTCTATTAA 372
Query 364 AAGGCCCGACTTGTTTACAAATCTTCTCCTTATTGCTGCTTCGCCCAGGTATATAAACAG 423
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 373 AAGGCCCGACTTGTTTACAAATCTTCTCCTTATTGCTGCTTCTCCAAGGTATATAAACAG 432
Query 424 TGAGGATTACAAGGGAGGGTTTGAGTCAAAAGACATCGACACGATCATCT-CCAACATTG 482
|||||||||||| ||||||||||||||||||||||| ||||||||||| | ||| |||||
Sbjct 433 TGAGGATTACAAAGGAGGGTTTGAGTCAAAAGACATTGACACGATCAT-TACCAGCATTG 491
Query 483 GCTCCAACTACGAGGCTTGGGCGGTTGAATTCTCCTCCGTCGTGGTCGACCCGAGAGACT 542
||||||||||||| |||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 492 GCTCCAACTACGAAGCTTGGGCGGTTGATTTCTCCTCATTCGTGGTCGACTCGAGAGACT 551
Query 543 CTCTCTCGGTCCAAAGGTTCGAGAAGTCCCTTAAGAAGATGAAGCCCGAGACGGCTCTTG 602
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 552 CTCTCTCGGTCCAAAGGTTCGAGAAGTCCCTTAAGAAGATGAAGCCCGAGACAGCTCTTG 611
Query 603 CCTTAGCTAAGATAGTGTTTGGTAGCGACGAGAGAGAGCTTTTGGGACAAGTGTCAGTGC 662
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 612 CCTTAGCTAAGATAGTGTTTGGTAGCGACGAGAGAGAGATTTTGGGACAAGTGTCAGTGC 671
Query 663 CTTGCCATATCATACAACCAGGAAACGACGTCGTAGTGCCTGTCTCCGTCGCTTACTTCA 722
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 672 CTTGCCATGTCATACAACCAGGAAACGACGTCGTAGTGCCTGTCTCCGTCGCATACTTCA 731
Query 723 TGCAGGAGAAGATTAAAGGGAAATCGACGGTGGAGATCATCGACGACGCGACCGGGCATT 782
|||||||||||||||| ||||||||||| |||||||||||||| ||||||| ||||||||
Sbjct 732 TGCAGGAGAAGATTAAGGGGAAATCGACAGTGGAGATCATCGAGGACGCGATCGGGCATT 791
Query 783 TTCCACAGATGACATCACATTTGGAGCTGCTTGGCGTCATGAGACGCCTCCTCGAGTTTT 842
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 792 TTCCACAGATGACATCACATTTGGAGCTGCTTGGCGTCATGAGGCGCCTCCTTGAGTTTT 851
Query 843 AAGGCTTATATA 854
||||||||||||
Sbjct 852 AAGGCTTATATA 863
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42146449333
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5