BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930539
Length=1045
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24490.1 | Symbols: | Alcohol dehydrogenase transcription f... 1629 0.0
> AT3G24490.1 | Symbols: | Alcohol dehydrogenase transcription
factor Myb/SANT-like family protein | chr3:8910770-8912196
FORWARD LENGTH=1427
Length=1427
Score = 1629 bits (882), Expect = 0.0
Identities = 990/1042 (95%), Gaps = 7/1042 (1%)
Strand=Plus/Plus
Query 2 TTCTGGGTTTTGCTCAAAGATGGGTGACAGCGAAGAAGAAACTGGGTATCCAAAAAAGTT 61
|||||||||||||||||||||||||||||||||||| ||||| || || |||||||||||
Sbjct 234 TTCTGGGTTTTGCTCAAAGATGGGTGACAGCGAAGATGAAACAGGATACCCAAAAAAGTT 293
Query 62 TTACTCTTTGAATCGCCAAAACCATCCAATGTATAGTAGACCAATCCCTAAGCGTCACGC 121
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 294 TTACTCTTTGAATCGGCAAAACCATCCAATGTATAGTAGACCAATACCTAAGCGTCACGC 353
Query 122 GTATTACAATgaagaagaagacgaagatgaagtcgaaggcgaagaagaagaGCCACAAGG 181
||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 354 GTATTACAATGAAGAAGAAGACGAAGATGAAGTCGAAGGAGAAGAGGAAGATCCACAAGG 413
Query 182 AGGATACACTCGGGGGAATGAGAGGTTTCAGAAGAGACAGAAACCAAACAAACCTGTTGT 241
|||||||| ||| || |||||||||||||||||||||||||||||||||||| || ||
Sbjct 414 AGGATACATTCGTGGAAATGAGAGGTTTCAGAAGAGACAGAAACCAAACAAA---GTAGT 470
Query 242 GTCTGGGTTTGAATTTGCTGGTCCTAGTGATACTAAAGTTGCGTATGATTGGAGAGAGCA 301
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 471 TTCTGGGTTTGAATTTGCTGGTCCTAGTGATGCTAAAGTTGCGTATGATTGGAGAGAGCA 530
Query 302 AGAAGCTTTTGTCTTGCTTGAAGTTTGGGGAGATAGGTTTTTGCAATTGGGTAGGAGGAG 361
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 531 AGAAGCTTTTGTGTTGCTTGAAGTTTGGGGAGATAGGTTTTTGCAATTGGGTAGAAGGAG 590
Query 362 TTTGAGGAATGAGGATTGGAATGAAGTAGCTGAGAAAGTGAGTGAGGAGCTAAGGATGGA 421
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 TTTGAGGAACGAGGATTGGAATGAAGTAGCTGAGAAAGTGAGTGAGGAGCTAAGGATGGA 650
Query 422 GAAATCTGAGACGCAATGTAGGAGGATGATTGAT-AGCTTGAAGAGGAAGTATAGGAAAG 480
|||||||||||||||||||||||| ||||||||| | |||||||||||||||||| ||||
Sbjct 651 GAAATCTGAGACGCAATGTAGGAGAATGATTGATGA-CTTGAAGAGGAAGTATAGAAAAG 709
Query 481 AGAAGATTAAGGTTGAGAAATCGGGTTTAGGTTCGAGTAAATGGGGGTTTTTCAATAAGT 540
|||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||
Sbjct 710 AGAAGATTAAGGTTGAGAAATCAGGTTTAGGTTCAAGTAAATGGTCGTTTTTCAATAAGT 769
Query 541 TGGATATGTTGCTTTGTGTTTCGCCTAAATCGGATTTAGGTTTAGCTTGTGGTGTTGATT 600
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 770 TGGATATGTTGCTTTGTGTTTCGCCCAAGTCGGATTTAGGTTTAGCTTGTGGTGTTGATT 829
Query 601 CAGGTGAGTTTGTGTTTATGAACACTAAGGTTTATTTGGATAAGTCGAACGGATTTGATG 660
||||||||||||||||||||||||||||||||||||| |||||||| || || |||||||
Sbjct 830 CAGGTGAGTTTGTGTTTATGAACACTAAGGTTTATTTAGATAAGTCTAATGGGTTTGATG 889
Query 661 AGATGATGGATAGTCCTGGTGATTCGGAAGAGGAGGAGGATGATGAAGATGAGGTTGATT 720
||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| |
Sbjct 890 AGATGATGGATAGTCCTGGTGATTCTGAAGAGGAGGAGGATGAGGATGATGAGGTTGAGT 949
Query 721 ACGAGAGGAAGAAGGTTAATGACGCTGCTTCGTATAAGATGTTGGCGGATTCGGTTGAGA 780
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 950 ACGAGAGGAAGAAGGTTAATGACGCTGCTTCGTATAAGATGTTGGCGGATTCTGTTGAGA 1009
Query 781 GGTTTGGGAAGATTTATGAGAAGATGGAGAAGAGTAAGAAAGAGCAAATGAAGGAGTTGG 840
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 GGTTTGGGAAGGTTTATGAGAAGATGGAGAAGAGTAAGAAAGAGCAAATGAAGGAGTTGG 1069
Query 841 AGAAGATGAGAGCTGATTTTCAGA-AGGATTTGGAGTTGCAGAAGAAACAGATTGTTGAT 899
|||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||
Sbjct 1070 AGAAGATGAGAGCTGATTTTCAGAGAG-ATTTGGAGTTGCAGAAGAAGCAGATTGTTGAT 1128
Query 900 AGAGCTCAGAGTGAGATTGCGCGGCTACGTGAAGAGGAAGAGAATCATCATGGTGGTGGT 959
|||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||
Sbjct 1129 AGAGCTCAGAGTGAGATTGCTAGGTTACGTGAAGAGGAGGAGAATCATCATGGTGGTGGT 1188
Query 960 AATGATGATGTGAGTGAAGATGAAGAAATGGAGAATGATTCTGATGTTAATCTCAGTGAT 1019
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 GATGATGATGAGAGTGAAGATGAAGAAATGGAGAATGATTCTGATGTTAATCTCAGTGAT 1248
Query 1020 GAGTGAGTTATACACTATGTAG 1041
|||| ||||||| |||||||||
Sbjct 1249 GAGTAAGTTATAAACTATGTAG 1270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51238829940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5