BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930544

Length=546
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G24506.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   549    1e-155


> AT3G24506.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; 
EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT2G17240.1); 
Has 4864 Blast hits to 709 proteins in 125 species: Archae 
- 0; Bacteria - 592; Metazoa - 786; Fungi - 33; Plants - 410; 
Viruses - 61; Other Eukaryotes - 2982 (source: NCBI BLink). 
| chr3:8928169-8929329 REVERSE LENGTH=695
Length=695

 Score =  549 bits (297),  Expect = 1e-155
 Identities = 453/522 (87%), Gaps = 35/522 (7%)
 Strand=Plus/Plus

Query  1    TCGAAG-A-ACGAGGCGGAGCTATGACGCCGCTTTCTATATCGGCATCACCTTCGCCGCC  58
            |||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  27   TCGAAGAACACGAGGCGGAGCTATGACGCCGCTTTCTATATCGGCATCGCCTTCGCCGCC  86

Query  59   GTGTCCACTTCTCTCTCCGCCACTATCTTCACCGTCGCTAAACAGA---GCT--G---A-  109
            ||| ||||||||||||||||||||||||||| ||||| ||||||||   |||  |   | 
Sbjct  87   GTGGCCACTTCTCTCTCCGCCACTATCTTCATCGTCGTTAAACAGAGCTGCTCCGTCTAT  146

Query  110  Atttt----ttt-t-tCG-A--AA-C--GG-TTGTC-T-ATC-TTCACCGTCGCT-AA-G  151
             ||||    ||| | ||| |  || |  || || || |  || |||| || || | || |
Sbjct  147  TTTTTCCCCTTTCTCTCGAATCAACCATGGCTTCTCGTGCTCTTTCATCGCCGTTCAACG  206

Query  152  C--CGCAATACGCAGAGAAAAGCATGGAAGCAGTTACAGGTGGTAGCTATGGCTCCTGAG  209
            |  |||  || || |  || | || ||||||||||||||||||| |||||||||||||||
Sbjct  207  CTTCGCTCTAAGCCG-CAAGA-CAAGGAAGCAGTTACAGGTGGTGGCTATGGCTCCTGAG  264

Query  210  GAAGAGAAGCTCACTCGTCGCAACCCACTCGATTTCCCTATAGAATGGGAGAGACCAAAG  269
            ||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct  265  GAAGAGAAGCTCACTCGTCGCAATCCTCTCGATTTCCCTATCGAATGGGAGAGACCAAAG  324

Query  270  CCAGGCAGGAGACCAGATATATTCCCTAAGTTTAGTCCTATGAAGTCACCGTTGCCTCCT  329
            ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  325  CCAGGGAGGAGACCAGATATATTCCCAAAGTTTAGTCCTATGAAGTCACCGTTGCCTCCT  384

Query  330  CCTATGCCTTACGATCCTCCagaagaagatgaagaagaggaagagaagaaagaagaagaa  389
            ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  385  CCTATGCCTTATGATCCTCCAGAAGAAGAGGAAGAAGAGGAAGAGAAGAAAGAAGAAGAA  444

Query  390  acagaagacgaccctgaaaaggaagaCGAGGACCAACCCGATAACCAGTAGTAAGAGGTC  449
            || ||||| ||||||||||||||||||||||||||||||||||||| || ||||||||| 
Sbjct  445  ACTGAAGATGACCCTGAAAAGGAAGACGAGGACCAACCCGATAACCGGTCGTAAGAGGTT  504

Query  450  TCATTTCT-CAAACTGTTATCGTTGTTGTTTGTCTTGCCTTA  490
            |||||| | | ||||||||| |||||||||| | ||||||||
Sbjct  505  TCATTTTTTCTAACTGTTATTGTTGTTGTTTTT-TTGCCTTA  545



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26171990587


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5