BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930549
Length=1278
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24515.1 | Symbols: UBC37 | ubiquitin-conjugating enzyme 37 ... 1751 0.0
> AT3G24515.1 | Symbols: UBC37 | ubiquitin-conjugating enzyme 37
| chr3:8934472-8936279 REVERSE LENGTH=1399
Length=1399
Score = 1751 bits (948), Expect = 0.0
Identities = 1186/1295 (92%), Gaps = 40/1295 (3%)
Strand=Plus/Plus
Query 1 GACGAAGAAGTTTCTGAATCAATGGCTCAAGCAGCGAGACTAAGCATGAGAATGCACAAA 60
||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||
Sbjct 52 GACGAAGAAGTTTCTGAATCAATGGCTCAAGCAGCGAGATTAAGCCTGAGAATGCAGAAA 111
Query 61 GAGCTAAAGCTTCTCCTCTCCGATCCACCTCATGGCGCTTCGTTTCCACATCTCTCTTCC 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 112 GAGCTAAAGCTTCTCCTCTCCGATCCACCTCACGGCGCTTCGTTTCCACATCTCTCTTCC 171
Query 121 GCCGCCTCTGGCTCCGGCGACTTCTCCACTTTCTCCACCATCGATGCTCAAATCGAAGGT 180
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 172 GCCGCCAATGGCTCCGGCGATTTCTCCACTTTCTCCACCATCGATGCTCAAATCGAAGGT 231
Query 181 CCTGAAGATACTGTATATGCTAATGGAATCTTCAATGTGAAGATTCAAATCCCTGAGAGA 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 232 CCTGAAGATACTGTATATGCTAATGGAATCTTCAATTTGAAGATTCAAATCCCTGAGAGA 291
Query 241 TATCCATTTCAGCCTCCAATTGTGGCATTTTCTACACCGATTTATCACCCAAACATCGAT 300
|||||||||||||| ||||||||| | || |||||||||||||||||||||||||||||
Sbjct 292 TATCCATTTCAGCCACCAATTGTGTCGTTCGCTACACCGATTTATCACCCAAACATCGAT 351
Query 301 AACAGTGGCCGGATTTGCCTTGACATTCTTAATCTCCCTCCCAAGGGTGCTTGGCAACCA 360
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 352 AACAGTGGCCGGATTTGCCTTGACATTCTAAATCTCCCTCCCAAGGGAGCTTGGCAACCA 411
Query 361 TCGTTGAATATCTCGACAGTTTTGACGAGTATCG-GATTGTTGCTTAGTGAACCGAATCC 419
|||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||
Sbjct 412 TCGTTGAATATCTCGACAGTTTTGACGAGTAT-GAGATTGTTGCTTAGTGAACCAAATCC 470
Query 420 GGATGATGGATTGATGTGTGAAGTAAGCAGGGAGTATAAATACAATAGGCAAACTTTCGA 479
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 471 TGATGATGGATTGATGTGTGAAGTAAGCAGGGAGTATAAATACAATAGACAAACTTTTGA 530
Query 480 TTATAAAGCACGAGAGATGACTGAGAAGTATGCTAAGGTTAA-GCCTGATGGAAGCAGCA 538
|||||| ||||||||||||||||||||||||||||||||||| || ||||||| ||||||
Sbjct 531 TTATAAGGCACGAGAGATGACTGAGAAGTATGCTAAGGTTAAAGC-TGATGGATGCAGCA 589
Query 539 CCAGCTTCCAAATTAAGAATCATGGAGATGAGAAGGTTTG-TGAAAGTGGAAATAGTGTT 597
||||||| ||||||||||||||||||||||||||| | || |||||||||||||||||||
Sbjct 590 CCAGCTTACAAATTAAGAATCATGGAGATGAGAAG-TCTGGTGAAAGTGGAAATAGTGTT 648
Query 598 TTAGCTGGTAA-T-GACGATGGGATTGAATCTTCCTTAAGCATAGCACATACAGTGAACC 655
|||| ||| | ||| | | | |||||||| ||||||||||||||||||||||| |
Sbjct 649 A-AGCT--TAAGTTGAC-A-GTG---GAATCTTCTTTAAGCATAGCACATACAGTGAAAC 700
Query 656 ATGACGT-TGCAGCGAAAGATCAACAAGAGGATAGAAATGGGAAAAGAAAAGCAGTGGTT 714
||| | ||||| || |||| ||||||||||| | ||||||||||||||||||||||||
Sbjct 701 GTGA-GACTGCAGGGAGAGATGAACAAGAGGATGGCAATGGGAAAAGAAAAGCAGTGGTT 759
Query 715 GGTTTTGGCGAGGCGAATTCATTTGGTAACGATGGGATAAAAACGAGCAGGAAGAAGTTA 774
||||||||||||| |||||| ||||| ||||||||||| |||| ||| ||||||||||||
Sbjct 760 GGTTTTGGCGAGGGGAATTCGTTTGGAAACGATGGGATTAAAAGGAGTAGGAAGAAGTTA 819
Query 775 TCTCTTGCCTTGCCTCCTCAATCTCAAAAGAAGGACTTGTGTGGTGAAGAA---CTCACA 831
|||||||| |||||| |||||||||||||||| |||||||||||||||||| ||||||
Sbjct 820 TCTCTTGCATTGCCTTCTCAATCTCAAAAGAAAGACTTGTGTGGTGAAGAAGAGCTCACA 879
Query 832 AATG-TAGTTTCGGCAGCTTGCAAAGAAAACAAGAAACCAAATTCAAATGGAAAGAAGCT 890
|| | ||||| || ||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 880 CGTGGT-GTTTCAGCTGCTTGCAAAGAAAACAAAAAACCAAATTTGAATGGAAAGAAGCT 938
Query 891 TTCTCTGGGGCTGAAGCAGCCATTTAATGATAACTT-GGCCTTCTCGAGTTTTCGAACTT 949
||||||||||||||||||||||| |||||||| ||| ||| ||||||||||||||
Sbjct 939 TTCTCTGGGGCTGAAGCAGCCATGTAATGATA-CTTTGGC------GAGTTTTCGAACTT 991
Query 950 CTGCTGCAAAGAGTGACAACAATAGACTAAGCAGAAAACTGTCCTTGAGA-CAACCACTT 1008
||||||| |||||||||||||||||||||||| ||||||||||| ||||| || ||||||
Sbjct 992 CTGCTGCGAAGAGTGACAACAATAGACTAAGCCGAAAACTGTCCCTGAGATCA-CCACTT 1050
Query 1009 AGAGAGTTGAATGAAGTTAGCAAAACC-GAGGTACTTGCGCAAACTGATATGAAACTGGA 1067
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1051 GGAGAGTTGAATGAAGTTAGCAAA-CCTGAGGTACTTGCGCAAACTGATATGAAACTGGA 1109
Query 1068 AATGAATCAAAATGAAGATGACA-GAAGTTGGCGCGGTGAGTTTGAGAACTCGGGCTTGG 1126
||||||||||||||||||| || |||||| ||| |||||||||||||| |||| ||||
Sbjct 1110 GATGAATCAAAATGAAGATG-CAAGAAGTTTGCGAGGTGAGTTTGAGAATTCGGTATTGG 1168
Query 1127 AAGAAGCATCAATGCCTGAATCCATTGTTGTTCTAGACAGTGATGATAGTGGACAAGAAG 1186
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1169 AAGAAACATCAATGGCTGAATCCATTGTTGTTCTAGACAGTGATGATAGTGGACAAGAAG 1228
Query 1187 AAGAAGAAACAGTCTCTT-T--GAGGTCAAGATTATCACTACCAAAGAGAAGAGTCCTCA 1243
||||||||| |||||||| | |||||||||||||||||| ||||||| ||||||||||
Sbjct 1229 AAGAAGAAAGAGTCTCTTCTTCGAGGTCAAGATTATCACTGGCAAAGAGGAGAGTCCTCA 1288
Query 1244 AGTGTAGACCTTGAAAAGTGATGAAAACTGTTTTT 1278
| |||||||||||| ||||||||||||||||||||
Sbjct 1289 AATGTAGACCTTGATAAGTGATGAAAACTGTTTTT 1323
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62851082340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5