BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930556
Length=272
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23420.1 | Symbols: | F-box and associated interaction doma... 209 9e-54
AT5G28527.1 | Symbols: | pseudogene, hypothetical protein | ch... 189 1e-47
AT3G24580.1 | Symbols: | F-box and associated interaction doma... 167 5e-41
AT3G22770.1 | Symbols: | F-box associated ubiquitination effec... 128 3e-29
AT5G36730.1 | Symbols: | F-box and associated interaction doma... 75.0 3e-13
AT5G36820.1 | Symbols: | F-box and associated interaction doma... 75.0 3e-13
> AT3G23420.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8386273-8387324 REVERSE LENGTH=858
Length=858
Score = 209 bits (113), Expect = 9e-54
Identities = 202/243 (83%), Gaps = 14/243 (6%)
Strand=Plus/Plus
Query 8 AAGAGAGTTTATGATGGTCATGATGATGGATTTTAGGGTTTATTTGATGCGCGTCAATCT 67
|||||||| || | |||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 144 AAGAGAGTATAAGGTGGTCATGATGATGGATTTTAGGGTTTATTTGATGCGCATAAATCT 203
Query 68 TCACAACAACGTTGAATCATGTATAAAGCGTGAA-GCTAAACTTATTAGCCTAGACGATT 126
||| ||||||||||||| ||||||||||||||| | | ||||| || || |||| ||
Sbjct 204 TCAGAACAACGTTGAATTGTGTATAAAGCGTGAACG-TGAACTTCTTTTCCCCGACGCTT 262
Query 127 CAGTTGAAGTAGATGTAAC-TCGA-GT-TGTTCACTGCGACGGTTTATTGTTATGCATCA 183
||| | || | | || | || | || | ||||||||||||||||||||||||||||||
Sbjct 263 CAGATCAAATTTACGTC-CGTC-ACGTCT-TTCACTGCGACGGTTTATTGTTATGCATCA 319
Query 184 CT-AAAGACTACACTAAG-TTCGTGGTTTGTAACCCGTATT-TGGGGCAAACCCGGTGGA 240
| |||||| || ||| | || |||||||||||||||||| ||| |||||||||||||
Sbjct 320 -TGAAAGACAACCCTAGGCTT-GTGGTTTGTAACCCGTATAGTGGA-CAAACCCGGTGGA 376
Query 241 TCG 243
|||
Sbjct 377 TCG 379
> AT5G28527.1 | Symbols: | pseudogene, hypothetical protein |
chr5:10513366-10514577 FORWARD LENGTH=1212
Length=1212
Score = 189 bits (102), Expect = 1e-47
Identities = 156/182 (86%), Gaps = 4/182 (2%)
Strand=Plus/Plus
Query 64 ATCTTCACAACAACGTTGAATCATGTATAAAGCGTGAAGCTAAACTTATTAGCCTAGACG 123
||||| || ||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 282 ATCTTAACGACAACGTTGAATCATGTATCGAGCATGAAGCTAAACTTATTAGCCTAGACG 341
Query 124 ATTCAGT-TGAAGTAGATGTAACTCGAGTTGTTCACTGCGACGGTTTATTGTTATGCATC 182
||||| | |||||| | ||| || |||| ||||||||||||||||||||||||||||
Sbjct 342 ATTCA-TATGAAGTCCAAGTATCTAAAGTTTTTCACTGCGACGGTTTATTGTTATGCATT 400
Query 183 ACTAAAGACTACACTAAGTTCGTGGTTTGTAACCCGTATTTGGGG-CAAACCCGGTGGAT 241
|| |||||| | |||||| || | ||||| |||||||||| |||| |||||| ||||||
Sbjct 401 ACAAAAGACCATACTAAGCTCCTAGTTTGGAACCCGTATT-GGGGTCAAACCAAGTGGAT 459
Query 242 CG 243
||
Sbjct 460 CG 461
> AT3G24580.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8969162-8970298 FORWARD LENGTH=1137
Length=1137
Score = 167 bits (90), Expect = 5e-41
Identities = 197/245 (80%), Gaps = 21/245 (9%)
Strand=Plus/Plus
Query 11 AGAGTTTATGATGGTCATGATGATGGATTTTAGGGTTTATTTGATGCGCGTCAATC-TTC 69
|||||||||||||||| |||||||||||||||||||||||||||| || ||||| | |||
Sbjct 177 AGAGTTTATGATGGTCCTGATGATGGATTTTAGGGTTTATTTGATTCGAGTCAA-CGTTC 235
Query 70 ACAACAACGTTGAATCATGTATAAAGCGTGAAGCTAAACTTATTAGCCTAGACGATTCAG 129
|||| || |||| || ||||| |||| ||||| | | ||||||||| | | |||| |
Sbjct 236 ACAATGACATTGAGTCGTGTATTAAGCCTGAAGGTGAGCTTATTAGCTTGGGCGAT---G 292
Query 130 TTGAAGTAGATGTAACTCGAGT-TGTTCACTGCGACGGTTTATTGTTATGCATCAC---- 184
|||| |||||| ||| ||| | |||||||||||||||||||| ||||||||||
Sbjct 293 ---AAGTCGATGTATCTCAAGTCT-TTCACTGCGACGGTTTATTGCTATGCATCACGGAA 348
Query 185 --TAA--A-GACTA-CACTAAGTTCGTGGTTTGTAACCCGTATTTGGGGCAAACCCGGTG 238
||| | || || | ||||| |||| |||| |||||||||| ||||||||| |||||
Sbjct 349 GATAACGAAGA-TAACGCTAAGGTCGTTCTTTGGAACCCGTATTGGGGGCAAACACGGTG 407
Query 239 GATCG 243
|||||
Sbjct 408 GATCG 412
> AT3G22770.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:8047684-8048667 REVERSE LENGTH=984
Length=984
Score = 128 bits (69), Expect = 3e-29
Identities = 133/162 (82%), Gaps = 11/162 (7%)
Strand=Plus/Plus
Query 83 ATCATGTATAAAGCGTGAAGCTAAACTTATTAGCCTAGACGATTCAGTTGAAGTAGATGT 142
|||||||||||| |||||||||||| |||||||| ||| ||| ||||| | | ||| |
Sbjct 90 ATCATGTATAAAACGTGAAGCTAAAGTTATTAGCTTAGGCGACGAAGTTG-A-T-GATAT 146
Query 143 AACTCGAGT-TGTTCACTGCGACGGTTTATTGTTATGCATCA-C-T-A---AAGACTACA 195
| ||| ||| | |||||||||||||||||||||||||||||| | | | ||| | | |
Sbjct 147 ATCTCAAGTCT-TTCACTGCGACGGTTTATTGTTATGCATCAGCATCACCCAAGCCAAGA 205
Query 196 CTAAGTTCGTGGTTTGTAACCCGTATTTGGGGCAAACCCGGT 237
||| | |||||||||| |||||||||| |||||| |||||||
Sbjct 206 CTAGGCTCGTGGTTTGGAACCCGTATTGGGGGCATACCCGGT 247
> AT5G36730.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:14436317-14437549 FORWARD LENGTH=1233
Length=1233
Score = 75.0 bits (40), Expect = 3e-13
Identities = 137/181 (76%), Gaps = 17/181 (9%)
Strand=Plus/Plus
Query 72 AACAACGTTGAATCATGTATAAAGCGTGAAGCTAAACTTATTAGCCTAGACGAT--TC-A 128
||||| ||| |||||| ||| | || |||||||||| ||||| ||| | ||| || |
Sbjct 247 AACAATGTTAAATCATCTATCATGCAAAAAGCTAAACTCATTAGGCTAAATGATGATCGA 306
Query 129 GTT-GAAGTAGATG-TA-A-CTCGAGT-TGTTCACTGCGACGGTTTATTGTTATGCATCA 183
||| | ||| |||| || | | ||| | ||||||||||||||||||||||||||||||
Sbjct 307 GTTCG-AGTCGATGATATATGTAAAGTCT-TTCACTGCGACGGTTTATTGTTATGCATCA 364
Query 184 CTAAAGACTACACTAAG-TTCGTGGTTTGTAACCCGTATT-TGGGGCAAACCCGGTGGAT 241
||| | | | | | || ||||||||||| || |||| |||| ||||| |||| ||
Sbjct 365 CTATTGGG-AT-C-AGGCTT-GTGGTTTGTAATCCTTATTGTGGG-CAAACAAGGTGTAT 419
Query 242 C 242
|
Sbjct 420 C 420
> AT5G36820.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:14495617-14496849 FORWARD LENGTH=1233
Length=1233
Score = 75.0 bits (40), Expect = 3e-13
Identities = 137/181 (76%), Gaps = 17/181 (9%)
Strand=Plus/Plus
Query 72 AACAACGTTGAATCATGTATAAAGCGTGAAGCTAAACTTATTAGCCTAGACGAT--TC-A 128
||||| ||| |||||| ||| | || |||||||||| ||||| ||| | ||| || |
Sbjct 247 AACAATGTTAAATCATCTATCATGCAAAAAGCTAAACTCATTAGGCTAAATGATGATCGA 306
Query 129 GTT-GAAGTAGATG-TA-A-CTCGAGT-TGTTCACTGCGACGGTTTATTGTTATGCATCA 183
||| | ||| |||| || | | ||| | ||||||||||||||||||||||||||||||
Sbjct 307 GTTCG-AGTCGATGATATATGTAAAGTCT-TTCACTGCGACGGTTTATTGTTATGCATCA 364
Query 184 CTAAAGACTACACTAAG-TTCGTGGTTTGTAACCCGTATT-TGGGGCAAACCCGGTGGAT 241
||| | | | | | || ||||||||||| || |||| |||| ||||| |||| ||
Sbjct 365 CTATTGGG-AT-C-AGGCTT-GTGGTTTGTAATCCTTATTGTGGG-CAAACAAGGTGTAT 419
Query 242 C 242
|
Sbjct 420 C 420
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12466401752
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5