BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg930557 Length=643 Score E Sequences producing significant alignments: (Bits) Value AT3G24580.1 | Symbols: | F-box and associated interaction doma... 298 5e-80 AT3G22770.1 | Symbols: | F-box associated ubiquitination effec... 291 8e-78 AT3G19470.1 | Symbols: | F-box and associated interaction doma... 267 1e-70 AT5G36200.1 | Symbols: | F-box and associated interaction doma... 150 1e-35 AT2G04730.1 | Symbols: | pseudogene, F-box protein-related, co... 75.0 8e-13 AT3G22421.1 | Symbols: | F-box and associated interaction doma... 54.7 1e-06 > AT3G24580.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:8969162-8970298 FORWARD LENGTH=1137 Length=1137 Score = 298 bits (161), Expect = 5e-80 Identities = 478/624 (77%), Gaps = 50/624 (8%) Strand=Plus/Plus Query 7 TGAGTACAAAATCTATGACT-TTAACTCTGATTCATGGAGGGTTATCGATGTCACTCCAG 65 ||||| ||||||||| | | | |||||||||||||||| |||| | ||||| |||||| Sbjct 534 TGAGTTCAAAATCTA-CAATATCAACTCTGATTCATGGAAGGTTCTTGATGTGTCTCCAG 592 Query 66 ACTGGACTAT-GTATTTTTATGA-CCGTGGCGTCTCTCTCAAGGGAAATACAT--TGGTT 121 |||||| || | ||| |||| | |||||||| ||||||||||||||||||| ||| | Sbjct 593 ACTGGAAGATAG-ATTCTTAT-ATTCGTGGCGTGTCTCTCAAGGGAAATACATACTGGAT 650 Query 122 TGCTA-A-AGA-CCAGCTTTTAGAAGAAAGTACTTTCTTAATCTGTTTTGATTTTACAAG 178 ||||| | ||| || | || | | |||||||||| ||||||||||||| ||||| Sbjct 651 TGCTAGAGAGAGGCA-CGGATA-CGGCCA-TACTTTCTTAGTCTGTTTTGATTTCACAAG 707 Query 179 CGAGAGATTT-GGACCGCATTTGTCTATGCCGTA-TGAG--TTGTATTTTGAAGGTACTG 234 ||||||||| || ||| ||| || ||||| | | || ||| |||| || ||| | Sbjct 708 AGAGAGATTTAGG-TCGCGTTTACCTCTGCCG-AGTCAGCCGTGTGTTTT--AGATACCG 763 Query 235 CGAGTCTATCTAGTGTCAAAGAAGAGCAGCTTGCAGTTTTGTTTCAACG-TTGGGATACA 293 ||||||||||||||| | ||||||||||||||| ||||| ||||| | | | |||| Sbjct 764 TGAGTCTATCTAGTGTTAGAGAAGAGCAGCTTGCTGTTTTATTTCAGTGCTCAAG-TACA 822 Query 294 TTAGAGATAG-AAATATGGATTACGACTAAGATTGAGCCCAACGCGGTGTCT-TGGAACA 351 || ||||| | | || ||| | || || || ||||||||||| ||||||| | ||||||| Sbjct 823 TTGGAGAT-GCAGATCTGGGTAACAACCAAAATTGAGCCCAATGCGGTGT-TGTGGAACA 880 Query 352 GCAAGGTGTTCTTAGCCGTGAATATGAGATCATTCACTT--GCTTTGACTTTCAGATTTT 409 |||||||||||||||| ||| |||| | || |||||| | ||| | ||||| | || Sbjct 881 GCAAGGTGTTCTTAGCTGTGGATAT--G--CACTCACTTAAG-TTTCAGTTTCA-AGTTA 934 Query 410 GCTCACACATGCGAGTTTCTTCATTGACAAGGAGAAGAAAGTCGCCGTAGTGTTTGATAA 469 | | | | |||||||||| || ||| ||||||||| ||| | || || |||||| Sbjct 935 G---A-GC-TTCGAGTTTCTTTATCGACGAGGAGAAGAGAGTTGTTGTTGTTTTTGAT-- 987 Query 470 AAACAAAGAACGCAACGTAAAC-CCCACTCGCACCGTAGCTTACATCGTTGGAGTGGATG 528 ||| ||| |||| | | | | || |||||| | ||||||||||||||||||||||| Sbjct 988 AAAGAAA-AACGTTA-TTTAGCGTCCTCTCGCAACAAAGCTTACATCGTTGGAGTGGATG 1045 Query 529 GATCCTTGAAAGAAGCCGATCTTGGAGA-ATATGGAGACAAACATTG-TTATCCACTTGT 586 || ||| | || ||| || |||||| | | || ||||||| ||| ||| |||||||| Sbjct 1046 GAACCTGGGAACAAGTGGACCTTGGA-ATGTCTGTAGACAAA-TTTGTTTACCCACTTGT 1103 Query 587 GTGCTCTTATGTTCCAAGTTTAGT 610 |||||||||||||||||||||||| Sbjct 1104 GTGCTCTTATGTTCCAAGTTTAGT 1127 > AT3G22770.1 | Symbols: | F-box associated ubiquitination effector family protein | chr3:8047684-8048667 REVERSE LENGTH=984 Length=984 Score = 291 bits (157), Expect = 8e-78 Identities = 494/647 (76%), Gaps = 61/647 (9%) Strand=Plus/Plus Query 7 TGAGTACAAAATCTATGACTTTAACTCTGATTCATGGAGGG-TTATCGATGTCACTCCAG 65 ||||| || |||||| || ||||||||| |||||||||||| || || |||||||||||| Sbjct 369 TGAGTTCATAATCTACGATTTTAACTCTAATTCATGGAGGGTTTTTC-ATGTCACTCCAG 427 Query 66 ACTGG--ACTATGTA-TTTTTATGACCGTGGCGTCTCTCTCAAGGGAAAT-ACAT-TGGT 120 ||||| | || | | | || || | ||||||| ||||||||||||||| | | ||| Sbjct 428 ACTGGCAATTAGGGACTATTAAT-A--GTGGCGTGTCTCTCAAGGGAAATGCCTTCTGGG 484 Query 121 TTGCTAAAGACCAGCTTTTA-G----AA--G----AAA-G--TA--CTTTCTTAATCTGT 164 ||||| |||| || | ||| | || | ||| | | ||||||| ||| | Sbjct 485 TTGCTGAAGAGAAG-TATTACGAAACAAGTGAAACAAACGAAGAGTTTTTCTTACTCTCT 543 Query 165 TTTGATTTTACAAGCGAGAGATTTGGACCGCATTTGTCTATGCCGTATGAG-TTG-T-AT 221 |||||||| ||||| |||| ||||||||| | |||| || | |||| | || ||| | | Sbjct 544 TTTGATTTCACAAGAGAGACATTTGGACCACTTTTGCCTCTTCCGTTTCAGTTTGTTGAA 603 Query 222 TTTGAAGGTACTGCGAGTCTATCTAGTGTCAAAGAAGAGCAGCTTGCAGTTTTGTTTCA- 280 | ||||| | || |||| |||| | ||| | ||| ||||||||||| ||||| | ||| Sbjct 604 TCTGAAGATGCTTTGAGTGTATCCAATGTTAGAGACGAGCAGCTTGCTGTTTTATATCAG 663 Query 281 ACGTTGGGATACATTAGA-GATAGAAATATGGATTACGACTAAGATTGAGCCCAACGCGG 339 || |||||||||||| | ||| || || ||| | ||| ||||||||||||||||||||| Sbjct 664 CCG-TGGGATACATTA-ATGATGGAGATCTGGGTCACGTCTAAGATTGAGCCCAACGCGG 721 Query 340 TGTCTTGGAACAGCAAGGTGTTCTTAGCCGTGAATATGAGATCATTCACTTG-CTTTGAC 398 |||||||||||||||||||||||||| | |||| ||| ||| | ||| ||| | | | Sbjct 722 TGTCTTGGAACAGCAAGGTGTTCTTATCAGTGAGTATAAGAAAACTCA-TTGGCCCTCAG 780 Query 399 TTTCAGATTTTGCTCACACATGCG-AGTTTCTTCATTGACAAGGAGAAGAAAGTCGCCGT 457 |||||| ||||| | || | ||||||||||||||| |||||||||||||||| || Sbjct 781 TTTCAG-TTTTGTT------TGGGGAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGT 833 Query 458 AGTGTTTGATAAAAACAAAGAACGCAACGTAAACCCCACTCGCACCGTAGCTTACATCGT 517 || ||||||||| | | | | || || | | | | || ||||||||||| | Sbjct 834 TGTTTTTGATAAAGGCTAC-A--G-AA--TACAGCGC--TA-CA---TAGCTTACATCAT 881 Query 518 TGGAGTGGATGGATCCTTGAAAGAAGCCGATCTTGGAGAATATGGAGACA-AACATTGTT 576 |||||||||||||||| ||||||||| ||||||||||||| ||||| || | ||| Sbjct 882 TGGAGTGGATGGATCCATGAAAGAAGTGGATCTTGGAGAATC---AGACAGAAGGT-GTT 937 Query 577 ATCCACTTGTGTGCTCTTATGTTCCAAGTTTAGTTCAACTTAATTAG 623 | ||| ||||||| ||||||||||||||| |||| |||||||||||| Sbjct 938 ACCCAATTGTGTGGTCTTATGTTCCAAGTCTAGTGCAACTTAATTAG 984 > AT3G19470.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:6749524-6751014 FORWARD LENGTH=1388 Length=1388 Score = 267 bits (144), Expect = 1e-70 Identities = 374/481 (78%), Gaps = 32/481 (7%) Strand=Plus/Plus Query 152 TTTCTTAATCTGTTTTGATTTTACAAGCGAGAGATTTGGACCGCATTTGTCTATGCCGTA 211 ||||||| ||||||||||||| |||||||||| |||||| |||| |||| || | |||| Sbjct 835 TTTCTTACTCTGTTTTGATTTCACAAGCGAGACATTTGGGCCGCCTTTGCCTCTTCCGTT 894 Query 212 TGAG-TTG-TATTT-TGAAGGTACTGCGAGTCTATCTAGTGTCAAAGAAGAGCAGCTTGC 268 |||| ||| | ||| ||||| |||| |||| |||||||||| | |||||||||||||| Sbjct 895 TGAGTTTGCTGTTTCTGAAGATACTATGAGTGTATCTAGTGTTAGAGAAGAGCAGCTTGT 954 Query 269 AGTTTTGTTTCA-ACGTTGGGA-TACATTAGAGATAGAAATATGGATTACGACTAAGATT 326 || || | ||| || ||||| || ||| || | || || ||| | ||| |||||||| Sbjct 955 TGTATTATATCAGCCG-TGGGATTA-TTTACAGTTGGACATCTGGGTGACGTCTAAGATT 1012 Query 327 GAGCCCAACGCGGTGTCTTGGAACAGCAAGGTGTTCTTAGCCGTGAATATGAGATCATTC 386 ||||||||||| ||||| ||||||||||||||||||||| | |||| | | | | || Sbjct 1013 GAGCCCAACGCTGTGTCGTGGAACAGCAAGGTGTTCTTATCAGTGAGT-TTAAAACA--- 1068 Query 387 ACTTGCTTTGACTTTCAGATTT-TGCTCACACATGCGAGTTTCTTCATTGACAAGGAGAA 445 ||| | | | | |||| ||| | | || || |||||||||||| ||| ||||||| Sbjct 1069 ACTCG-TCAG-CCCTCAG-TTTCAGTTAACTTTTGGGAGTTTCTTCATCGACGAGGAGAA 1125 Query 446 GAAAGTCGCCGTAGTGTTTGATAAAAACAAAGAACGCAACGTAAACCCCACTCGCACCGT 505 ||||||||| || || ||||||||| || ||| | | || | |||| | | Sbjct 1126 GAAAGTCGCTGTGGTTTTTGATAAAGAC----TACG--A--T-AA---TAAGCGCAACAT 1173 Query 506 AGCTTACATCGTTGGAGTGGATGGATCCTTGAAAGAAGCCGATCTTGGAGAATATGGAGA 565 |||||||||| ||||||||||||||||||| |||| || ||||| |||| || | ||| Sbjct 1174 AGCTTACATCTTTGGAGTGGATGGATCCTTTAAAGCAGTTGATCTCGGAG-AT-T-CAGA 1230 Query 566 -CAAACATTGTTATCCACTTGTGTGCTCTTATGTTCCAAGTTTAGTTCAACTTAATTAGT 624 | || | |||| |||||||||||||||||||||||||||| |||| ||||||||||||| Sbjct 1231 CCGAA-AGTGTTTTCCACTTGTGTGCTCTTATGTTCCAAGTCTAGTGCAACTTAATTAGT 1289 Query 625 C 625 | Sbjct 1290 C 1290 > AT5G36200.1 | Symbols: | F-box and associated interaction domains-containing protein | chr5:14244106-14246296 REVERSE LENGTH=1416 Length=1416 Score = 150 bits (81), Expect = 1e-35 Identities = 351/474 (74%), Gaps = 48/474 (10%) Strand=Plus/Plus Query 153 TTCTTAATCTGTTTTGATTTTACAAGC-GAGAGATTTGGACCGCAT-TTGTCTATGCCGT 210 ||||| ||||||||||| ||||||| | |||||||||||||||| | || | |||| | Sbjct 724 TTCTTGATCTGTTTTGACTTTACAA-CAGAGAGATTTGGACCGCGTCTTCAC-CTGCCCT 781 Query 211 ATGAGTTGT-ATTTTGAAGGTACTGCGAGTCTATCTAGTGTCAAAGAAGAGCAGCTTGCA 269 | | | | ||| ||| | ||||| || ||| |||||||| | |||||| |||||||| Sbjct 782 TTCA-CTCTCATTCTGATGATACTGTGATTCTCTCTAGTGTTAGAGAAGAACAGCTTGCG 840 Query 270 GTTTTGTTTCAA-CG-TTGGGATACATTAGA-GATAGAAATATGGATTACGACTAAGATT 326 || ||| || || || || ||| | | || ||| || || ||| |||||||||||||| Sbjct 841 GTGTTGATT-AAGCGCTT-CGATTTA-TGGAGGATGGAGATTTGGGTTACGACTAAGATT 897 Query 327 GAGCCCAACGCGGTGTCTTGGAACAGCAAGGTGTTCTTAGCCG-TGAATATGAGATCA-T 384 ||||| || | ||| || ||| | | |||| |||||||||| | || |||||| | || | Sbjct 898 GAGCCTAAGGAGGTCTCATGG-A-A-CAAGTTGTTCTTAGCGGTTG-ATATGATACCACT 953 Query 385 --TCACTTGCTTTGACTTTCAGATTTTGCTCACACATGCGAGTTTCTTCATTGACAAGGA 442 |||| ||| | |||||| ||||| | | ||| |||||| ||||||||| || | Sbjct 954 GATCAC-TGC--T---TTTCAG-TTTTG-T---A-ATGTGAGTTTTTTCATTGACGAGAA 1001 Query 443 GAAGAAAGTCGCCGTAGTGT-TTGATAAAAACAAAGAACGCAACGTAAACCCCACTCGCA 501 |||||| |||| ||| || | ||| |||| | | | || | | || || | Sbjct 1002 GAAGAATGTCGTCGTGGT-TCTTGGTAAAGA-TGTG-TTG-AA--T--A---CA--CGAA 1048 Query 502 CCGTAGCTTACATCGTTGG-AGTGGATGGATCCTTGAAAGAAGCCGATCTTGGAGAATAT 560 | ||||| | || |||| | | ||||||| ||| ||| ||| ||||||||||||| | Sbjct 1049 ACATAGCTAATATTATTGGAAAT-GATGGATACTTTAAACAAGTGGATCTTGGAGAATCT 1107 Query 561 GGAGACAAACATTGTTATCCACTTGTGTGCTCTTATGTTCCAAGTTTAGTTCAA 614 | ||||| ||||||| |||||||||||||||||||||||||||| ||| ||| Sbjct 1108 ACAAACAAATATTGTTACCCACTTGTGTGCTCTTATGTTCCAAGTTCAGTGCAA 1161 > AT2G04730.1 | Symbols: | pseudogene, F-box protein-related, contains TIGRFAM TIGR01640 : F-box protein interaction domain; similar to F-box protein family, AtFBX9 (GI:20197985) (Arabidopsis thaliana) | chr2:1654500-1655699 REVERSE LENGTH=1200 Length=1200 Score = 75.0 bits (40), Expect = 8e-13 Identities = 97/123 (79%), Gaps = 10/123 (8%) Strand=Plus/Plus Query 157 TAATCTGTTTTGATTTTACAAGCGAGAGATTTGGACCGCATT-TGTCTATGCCGTATGA- 214 ||||||||||||||||||||||||||||||||||||||| || || || | |||| | | Sbjct 705 TAATCTGTTTTGATTTTACAAGCGAGAGATTTGGACCGC-TTCTGCCTCTACCGT-TAAA 762 Query 215 -GTTG--TATTTTGAAGGTACTGCGAGTCTATCTAGTGTCAAAGAAGAGCAGCTTGCAGT 271 | || |||| || | | || || | ||||| ||| ||||||||| ||||||| || Sbjct 763 CGCTGAGTATTATGGCG--A-TGTGATTTTATCTTCTGTTAAAGAAGAGAAGCTTGCGGT 819 Query 272 TTT 274 ||| Sbjct 820 TTT 822 > AT3G22421.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:7949116-7950396 REVERSE LENGTH=1281 Length=1281 Score = 54.7 bits (29), Expect = 1e-06 Identities = 31/32 (97%), Gaps = 0/32 (0%) Strand=Plus/Plus Query 583 TTGTGTGCTCTTATGTTCCAAGTTTAGTTCAA 614 |||||||||||||||||||||||||||| ||| Sbjct 1100 TTGTGTGCTCTTATGTTCCAAGTTTAGTGCAA 1131 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31044702846 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5