BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930557
Length=643
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24580.1 | Symbols: | F-box and associated interaction doma... 298 5e-80
AT3G22770.1 | Symbols: | F-box associated ubiquitination effec... 291 8e-78
AT3G19470.1 | Symbols: | F-box and associated interaction doma... 267 1e-70
AT5G36200.1 | Symbols: | F-box and associated interaction doma... 150 1e-35
AT2G04730.1 | Symbols: | pseudogene, F-box protein-related, co... 75.0 8e-13
AT3G22421.1 | Symbols: | F-box and associated interaction doma... 54.7 1e-06
> AT3G24580.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8969162-8970298 FORWARD LENGTH=1137
Length=1137
Score = 298 bits (161), Expect = 5e-80
Identities = 478/624 (77%), Gaps = 50/624 (8%)
Strand=Plus/Plus
Query 7 TGAGTACAAAATCTATGACT-TTAACTCTGATTCATGGAGGGTTATCGATGTCACTCCAG 65
||||| ||||||||| | | | |||||||||||||||| |||| | ||||| ||||||
Sbjct 534 TGAGTTCAAAATCTA-CAATATCAACTCTGATTCATGGAAGGTTCTTGATGTGTCTCCAG 592
Query 66 ACTGGACTAT-GTATTTTTATGA-CCGTGGCGTCTCTCTCAAGGGAAATACAT--TGGTT 121
|||||| || | ||| |||| | |||||||| ||||||||||||||||||| ||| |
Sbjct 593 ACTGGAAGATAG-ATTCTTAT-ATTCGTGGCGTGTCTCTCAAGGGAAATACATACTGGAT 650
Query 122 TGCTA-A-AGA-CCAGCTTTTAGAAGAAAGTACTTTCTTAATCTGTTTTGATTTTACAAG 178
||||| | ||| || | || | | |||||||||| ||||||||||||| |||||
Sbjct 651 TGCTAGAGAGAGGCA-CGGATA-CGGCCA-TACTTTCTTAGTCTGTTTTGATTTCACAAG 707
Query 179 CGAGAGATTT-GGACCGCATTTGTCTATGCCGTA-TGAG--TTGTATTTTGAAGGTACTG 234
||||||||| || ||| ||| || ||||| | | || ||| |||| || ||| |
Sbjct 708 AGAGAGATTTAGG-TCGCGTTTACCTCTGCCG-AGTCAGCCGTGTGTTTT--AGATACCG 763
Query 235 CGAGTCTATCTAGTGTCAAAGAAGAGCAGCTTGCAGTTTTGTTTCAACG-TTGGGATACA 293
||||||||||||||| | ||||||||||||||| ||||| ||||| | | | ||||
Sbjct 764 TGAGTCTATCTAGTGTTAGAGAAGAGCAGCTTGCTGTTTTATTTCAGTGCTCAAG-TACA 822
Query 294 TTAGAGATAG-AAATATGGATTACGACTAAGATTGAGCCCAACGCGGTGTCT-TGGAACA 351
|| ||||| | | || ||| | || || || ||||||||||| ||||||| | |||||||
Sbjct 823 TTGGAGAT-GCAGATCTGGGTAACAACCAAAATTGAGCCCAATGCGGTGT-TGTGGAACA 880
Query 352 GCAAGGTGTTCTTAGCCGTGAATATGAGATCATTCACTT--GCTTTGACTTTCAGATTTT 409
|||||||||||||||| ||| |||| | || |||||| | ||| | ||||| | ||
Sbjct 881 GCAAGGTGTTCTTAGCTGTGGATAT--G--CACTCACTTAAG-TTTCAGTTTCA-AGTTA 934
Query 410 GCTCACACATGCGAGTTTCTTCATTGACAAGGAGAAGAAAGTCGCCGTAGTGTTTGATAA 469
| | | | |||||||||| || ||| ||||||||| ||| | || || ||||||
Sbjct 935 G---A-GC-TTCGAGTTTCTTTATCGACGAGGAGAAGAGAGTTGTTGTTGTTTTTGAT-- 987
Query 470 AAACAAAGAACGCAACGTAAAC-CCCACTCGCACCGTAGCTTACATCGTTGGAGTGGATG 528
||| ||| |||| | | | | || |||||| | |||||||||||||||||||||||
Sbjct 988 AAAGAAA-AACGTTA-TTTAGCGTCCTCTCGCAACAAAGCTTACATCGTTGGAGTGGATG 1045
Query 529 GATCCTTGAAAGAAGCCGATCTTGGAGA-ATATGGAGACAAACATTG-TTATCCACTTGT 586
|| ||| | || ||| || |||||| | | || ||||||| ||| ||| ||||||||
Sbjct 1046 GAACCTGGGAACAAGTGGACCTTGGA-ATGTCTGTAGACAAA-TTTGTTTACCCACTTGT 1103
Query 587 GTGCTCTTATGTTCCAAGTTTAGT 610
||||||||||||||||||||||||
Sbjct 1104 GTGCTCTTATGTTCCAAGTTTAGT 1127
> AT3G22770.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:8047684-8048667 REVERSE LENGTH=984
Length=984
Score = 291 bits (157), Expect = 8e-78
Identities = 494/647 (76%), Gaps = 61/647 (9%)
Strand=Plus/Plus
Query 7 TGAGTACAAAATCTATGACTTTAACTCTGATTCATGGAGGG-TTATCGATGTCACTCCAG 65
||||| || |||||| || ||||||||| |||||||||||| || || ||||||||||||
Sbjct 369 TGAGTTCATAATCTACGATTTTAACTCTAATTCATGGAGGGTTTTTC-ATGTCACTCCAG 427
Query 66 ACTGG--ACTATGTA-TTTTTATGACCGTGGCGTCTCTCTCAAGGGAAAT-ACAT-TGGT 120
||||| | || | | | || || | ||||||| ||||||||||||||| | | |||
Sbjct 428 ACTGGCAATTAGGGACTATTAAT-A--GTGGCGTGTCTCTCAAGGGAAATGCCTTCTGGG 484
Query 121 TTGCTAAAGACCAGCTTTTA-G----AA--G----AAA-G--TA--CTTTCTTAATCTGT 164
||||| |||| || | ||| | || | ||| | | ||||||| ||| |
Sbjct 485 TTGCTGAAGAGAAG-TATTACGAAACAAGTGAAACAAACGAAGAGTTTTTCTTACTCTCT 543
Query 165 TTTGATTTTACAAGCGAGAGATTTGGACCGCATTTGTCTATGCCGTATGAG-TTG-T-AT 221
|||||||| ||||| |||| ||||||||| | |||| || | |||| | || ||| | |
Sbjct 544 TTTGATTTCACAAGAGAGACATTTGGACCACTTTTGCCTCTTCCGTTTCAGTTTGTTGAA 603
Query 222 TTTGAAGGTACTGCGAGTCTATCTAGTGTCAAAGAAGAGCAGCTTGCAGTTTTGTTTCA- 280
| ||||| | || |||| |||| | ||| | ||| ||||||||||| ||||| | |||
Sbjct 604 TCTGAAGATGCTTTGAGTGTATCCAATGTTAGAGACGAGCAGCTTGCTGTTTTATATCAG 663
Query 281 ACGTTGGGATACATTAGA-GATAGAAATATGGATTACGACTAAGATTGAGCCCAACGCGG 339
|| |||||||||||| | ||| || || ||| | ||| |||||||||||||||||||||
Sbjct 664 CCG-TGGGATACATTA-ATGATGGAGATCTGGGTCACGTCTAAGATTGAGCCCAACGCGG 721
Query 340 TGTCTTGGAACAGCAAGGTGTTCTTAGCCGTGAATATGAGATCATTCACTTG-CTTTGAC 398
|||||||||||||||||||||||||| | |||| ||| ||| | ||| ||| | | |
Sbjct 722 TGTCTTGGAACAGCAAGGTGTTCTTATCAGTGAGTATAAGAAAACTCA-TTGGCCCTCAG 780
Query 399 TTTCAGATTTTGCTCACACATGCG-AGTTTCTTCATTGACAAGGAGAAGAAAGTCGCCGT 457
|||||| ||||| | || | ||||||||||||||| |||||||||||||||| ||
Sbjct 781 TTTCAG-TTTTGTT------TGGGGAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGT 833
Query 458 AGTGTTTGATAAAAACAAAGAACGCAACGTAAACCCCACTCGCACCGTAGCTTACATCGT 517
|| ||||||||| | | | | || || | | | | || ||||||||||| |
Sbjct 834 TGTTTTTGATAAAGGCTAC-A--G-AA--TACAGCGC--TA-CA---TAGCTTACATCAT 881
Query 518 TGGAGTGGATGGATCCTTGAAAGAAGCCGATCTTGGAGAATATGGAGACA-AACATTGTT 576
|||||||||||||||| ||||||||| ||||||||||||| ||||| || | |||
Sbjct 882 TGGAGTGGATGGATCCATGAAAGAAGTGGATCTTGGAGAATC---AGACAGAAGGT-GTT 937
Query 577 ATCCACTTGTGTGCTCTTATGTTCCAAGTTTAGTTCAACTTAATTAG 623
| ||| ||||||| ||||||||||||||| |||| ||||||||||||
Sbjct 938 ACCCAATTGTGTGGTCTTATGTTCCAAGTCTAGTGCAACTTAATTAG 984
> AT3G19470.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:6749524-6751014 FORWARD LENGTH=1388
Length=1388
Score = 267 bits (144), Expect = 1e-70
Identities = 374/481 (78%), Gaps = 32/481 (7%)
Strand=Plus/Plus
Query 152 TTTCTTAATCTGTTTTGATTTTACAAGCGAGAGATTTGGACCGCATTTGTCTATGCCGTA 211
||||||| ||||||||||||| |||||||||| |||||| |||| |||| || | ||||
Sbjct 835 TTTCTTACTCTGTTTTGATTTCACAAGCGAGACATTTGGGCCGCCTTTGCCTCTTCCGTT 894
Query 212 TGAG-TTG-TATTT-TGAAGGTACTGCGAGTCTATCTAGTGTCAAAGAAGAGCAGCTTGC 268
|||| ||| | ||| ||||| |||| |||| |||||||||| | ||||||||||||||
Sbjct 895 TGAGTTTGCTGTTTCTGAAGATACTATGAGTGTATCTAGTGTTAGAGAAGAGCAGCTTGT 954
Query 269 AGTTTTGTTTCA-ACGTTGGGA-TACATTAGAGATAGAAATATGGATTACGACTAAGATT 326
|| || | ||| || ||||| || ||| || | || || ||| | ||| ||||||||
Sbjct 955 TGTATTATATCAGCCG-TGGGATTA-TTTACAGTTGGACATCTGGGTGACGTCTAAGATT 1012
Query 327 GAGCCCAACGCGGTGTCTTGGAACAGCAAGGTGTTCTTAGCCGTGAATATGAGATCATTC 386
||||||||||| ||||| ||||||||||||||||||||| | |||| | | | | ||
Sbjct 1013 GAGCCCAACGCTGTGTCGTGGAACAGCAAGGTGTTCTTATCAGTGAGT-TTAAAACA--- 1068
Query 387 ACTTGCTTTGACTTTCAGATTT-TGCTCACACATGCGAGTTTCTTCATTGACAAGGAGAA 445
||| | | | | |||| ||| | | || || |||||||||||| ||| |||||||
Sbjct 1069 ACTCG-TCAG-CCCTCAG-TTTCAGTTAACTTTTGGGAGTTTCTTCATCGACGAGGAGAA 1125
Query 446 GAAAGTCGCCGTAGTGTTTGATAAAAACAAAGAACGCAACGTAAACCCCACTCGCACCGT 505
||||||||| || || ||||||||| || ||| | | || | |||| | |
Sbjct 1126 GAAAGTCGCTGTGGTTTTTGATAAAGAC----TACG--A--T-AA---TAAGCGCAACAT 1173
Query 506 AGCTTACATCGTTGGAGTGGATGGATCCTTGAAAGAAGCCGATCTTGGAGAATATGGAGA 565
|||||||||| ||||||||||||||||||| |||| || ||||| |||| || | |||
Sbjct 1174 AGCTTACATCTTTGGAGTGGATGGATCCTTTAAAGCAGTTGATCTCGGAG-AT-T-CAGA 1230
Query 566 -CAAACATTGTTATCCACTTGTGTGCTCTTATGTTCCAAGTTTAGTTCAACTTAATTAGT 624
| || | |||| |||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1231 CCGAA-AGTGTTTTCCACTTGTGTGCTCTTATGTTCCAAGTCTAGTGCAACTTAATTAGT 1289
Query 625 C 625
|
Sbjct 1290 C 1290
> AT5G36200.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:14244106-14246296 REVERSE LENGTH=1416
Length=1416
Score = 150 bits (81), Expect = 1e-35
Identities = 351/474 (74%), Gaps = 48/474 (10%)
Strand=Plus/Plus
Query 153 TTCTTAATCTGTTTTGATTTTACAAGC-GAGAGATTTGGACCGCAT-TTGTCTATGCCGT 210
||||| ||||||||||| ||||||| | |||||||||||||||| | || | |||| |
Sbjct 724 TTCTTGATCTGTTTTGACTTTACAA-CAGAGAGATTTGGACCGCGTCTTCAC-CTGCCCT 781
Query 211 ATGAGTTGT-ATTTTGAAGGTACTGCGAGTCTATCTAGTGTCAAAGAAGAGCAGCTTGCA 269
| | | | ||| ||| | ||||| || ||| |||||||| | |||||| ||||||||
Sbjct 782 TTCA-CTCTCATTCTGATGATACTGTGATTCTCTCTAGTGTTAGAGAAGAACAGCTTGCG 840
Query 270 GTTTTGTTTCAA-CG-TTGGGATACATTAGA-GATAGAAATATGGATTACGACTAAGATT 326
|| ||| || || || || ||| | | || ||| || || ||| ||||||||||||||
Sbjct 841 GTGTTGATT-AAGCGCTT-CGATTTA-TGGAGGATGGAGATTTGGGTTACGACTAAGATT 897
Query 327 GAGCCCAACGCGGTGTCTTGGAACAGCAAGGTGTTCTTAGCCG-TGAATATGAGATCA-T 384
||||| || | ||| || ||| | | |||| |||||||||| | || |||||| | || |
Sbjct 898 GAGCCTAAGGAGGTCTCATGG-A-A-CAAGTTGTTCTTAGCGGTTG-ATATGATACCACT 953
Query 385 --TCACTTGCTTTGACTTTCAGATTTTGCTCACACATGCGAGTTTCTTCATTGACAAGGA 442
|||| ||| | |||||| ||||| | | ||| |||||| ||||||||| || |
Sbjct 954 GATCAC-TGC--T---TTTCAG-TTTTG-T---A-ATGTGAGTTTTTTCATTGACGAGAA 1001
Query 443 GAAGAAAGTCGCCGTAGTGT-TTGATAAAAACAAAGAACGCAACGTAAACCCCACTCGCA 501
|||||| |||| ||| || | ||| |||| | | | || | | || || |
Sbjct 1002 GAAGAATGTCGTCGTGGT-TCTTGGTAAAGA-TGTG-TTG-AA--T--A---CA--CGAA 1048
Query 502 CCGTAGCTTACATCGTTGG-AGTGGATGGATCCTTGAAAGAAGCCGATCTTGGAGAATAT 560
| ||||| | || |||| | | ||||||| ||| ||| ||| ||||||||||||| |
Sbjct 1049 ACATAGCTAATATTATTGGAAAT-GATGGATACTTTAAACAAGTGGATCTTGGAGAATCT 1107
Query 561 GGAGACAAACATTGTTATCCACTTGTGTGCTCTTATGTTCCAAGTTTAGTTCAA 614
| ||||| ||||||| |||||||||||||||||||||||||||| ||| |||
Sbjct 1108 ACAAACAAATATTGTTACCCACTTGTGTGCTCTTATGTTCCAAGTTCAGTGCAA 1161
> AT2G04730.1 | Symbols: | pseudogene, F-box protein-related,
contains TIGRFAM TIGR01640 : F-box protein interaction domain;
similar to F-box protein family, AtFBX9 (GI:20197985) (Arabidopsis
thaliana) | chr2:1654500-1655699 REVERSE LENGTH=1200
Length=1200
Score = 75.0 bits (40), Expect = 8e-13
Identities = 97/123 (79%), Gaps = 10/123 (8%)
Strand=Plus/Plus
Query 157 TAATCTGTTTTGATTTTACAAGCGAGAGATTTGGACCGCATT-TGTCTATGCCGTATGA- 214
||||||||||||||||||||||||||||||||||||||| || || || | |||| | |
Sbjct 705 TAATCTGTTTTGATTTTACAAGCGAGAGATTTGGACCGC-TTCTGCCTCTACCGT-TAAA 762
Query 215 -GTTG--TATTTTGAAGGTACTGCGAGTCTATCTAGTGTCAAAGAAGAGCAGCTTGCAGT 271
| || |||| || | | || || | ||||| ||| ||||||||| ||||||| ||
Sbjct 763 CGCTGAGTATTATGGCG--A-TGTGATTTTATCTTCTGTTAAAGAAGAGAAGCTTGCGGT 819
Query 272 TTT 274
|||
Sbjct 820 TTT 822
> AT3G22421.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:7949116-7950396 REVERSE LENGTH=1281
Length=1281
Score = 54.7 bits (29), Expect = 1e-06
Identities = 31/32 (97%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 583 TTGTGTGCTCTTATGTTCCAAGTTTAGTTCAA 614
|||||||||||||||||||||||||||| |||
Sbjct 1100 TTGTGTGCTCTTATGTTCCAAGTTTAGTGCAA 1131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31044702846
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5