BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930559
Length=1149
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24580.1 | Symbols: | F-box and associated interaction doma... 891 0.0
AT3G23420.1 | Symbols: | F-box and associated interaction doma... 322 5e-87
AT3G22770.1 | Symbols: | F-box associated ubiquitination effec... 263 3e-69
AT3G19470.1 | Symbols: | F-box and associated interaction doma... 252 6e-66
AT5G28527.1 | Symbols: | pseudogene, hypothetical protein | ch... 171 2e-41
AT2G28280.1 | Symbols: | pseudogene, hypothetical protein | ch... 135 7e-31
AT5G36200.1 | Symbols: | F-box and associated interaction doma... 115 9e-25
AT5G36730.1 | Symbols: | F-box and associated interaction doma... 100 2e-20
AT5G36820.1 | Symbols: | F-box and associated interaction doma... 100 2e-20
AT3G22940.1 | Symbols: | F-box associated ubiquitination effec... 69.4 7e-11
> AT3G24580.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8969162-8970298 FORWARD LENGTH=1137
Length=1137
Score = 891 bits (482), Expect = 0.0
Identities = 947/1158 (82%), Gaps = 86/1158 (7%)
Strand=Plus/Plus
Query 22 ATGACGAAGATGTCCAATCTTCCC-AGCGATTTGGGC-GAGGAGGTGCTCTGTAGAATTC 79
|||||||||||||| |||| |||| | ||||| ||| || |||||||||| ||| ||
Sbjct 1 ATGACGAAGATGTCTAATC-TCCCTAATGATTT-GGCGGAAGAGGTGCTCTCTAGGGTTT 58
Query 80 CGTTGACATCTCTGAGAAAAGTCCGATC-TACTTGCAAAAAGTGGAACACTTTATTC-AA 137
|||| |||||||||||||| |||||| | |||||| ||| | ||||| |||||| || ||
Sbjct 59 CGTTAACATCTCTGAGAAACGTCCGA-CTTACTTGTAAAGATTGGAATACTTTA-TCTAA 116
Query 138 AGGTGAGAGCTTTGCGAAGAAGT-ACCTTGGTGATCAAGCAAAAGTAGCAGC-AACGGAA 195
||||||||||||||| ||||| | |||||||| ||||||||| ||||||||| || ||||
Sbjct 117 AGGTGAGAGCTTTGCAAAGAA-TCACCTTGGTTATCAAGCAATAGTAGCAGCGAA-GGAA 174
Query 196 AAAGAGTTTATGATGGTCATGATGATGGATTTTAGGGTTTATTTGATGCGCGTCAATC-T 254
|||||||||||||||||| |||||||||||||||||||||||||||| || ||||| | |
Sbjct 175 AAAGAGTTTATGATGGTCCTGATGATGGATTTTAGGGTTTATTTGATTCGAGTCAA-CGT 233
Query 255 TCACAATGACGTTAAGTCATGTA-TAATGCGTGAAGGTGAACTTGTTAGCTTAGAAGATG 313
|||||||||| || |||| |||| ||| || ||||||||| ||| ||||||| | ||||
Sbjct 234 TCACAATGACATTGAGTCGTGTATTAA-GCCTGAAGGTGAGCTTATTAGCTTGGGCGATG 292
Query 314 AAGTCAATGTATCTCAAGTCTTTCACTGCGACGGTTTATTGTTATGCATTATGGAAGATA 373
||||| ||||||||||||||||||||||||||||||||||| ||||||| | ||||||||
Sbjct 293 AAGTCGATGTATCTCAAGTCTTTCACTGCGACGGTTTATTGCTATGCATCACGGAAGATA 352
Query 374 A------TA-C--TAGGGTTGTTGTTTGGAACCCGTATTGGGGGCAAACCCGGTTGATCG 424
| || | || ||| ||| ||||||||||||||||||||||||| |||| |||||
Sbjct 353 ACGAAGATAACGCTAAGGTCGTTCTTTGGAACCCGTATTGGGGGCAAACACGGTGGATCG 412
Query 425 AGTCTA-AGCATGATTTCCAAAAAATTT-AT-TCGTATATGTATGCTCTCGGATACGAGA 481
|||||| | || ||||||| ||| || | | ||||| |||||||||||||||| |||
Sbjct 413 AGTCTACAA-ATAATTTCCACAAA-TTGGACAT-GTATACGTATGCTCTCGGATACAAGA 469
Query 482 AGAGCAGCAAGTCATGCCGCATCTACAAAATCTTGAGATTTATTGATTTTTCTCCCACTT 541
|||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 470 AGAGCAGCAAATCAAGCCGCAGCTACAAAATCTTGAGATTTATTGATTTTTCTCCCACTT 529
Query 542 ATGT-TGAGTTTAAAATCTACGATATTAACTCTAATTCATGGAGGGATCTTGATGTCATC 600
| | |||||| ||||||||| |||| |||||| ||||||||| || ||||||||| ||
Sbjct 530 GT-TCTGAGTTCAAAATCTACAATATCAACTCTGATTCATGGAAGGTTCTTGATGTG-TC 587
Query 601 ACTCCATACTGTAAGATATACGCTCATCGTCGTGGTGTCTCTGTCAAGGGAAATACGTAC 660
|||| |||| |||||| | || || |||||| || ||| ||||||||||||| |||
Sbjct 588 --TCCAGACTGGAAGATAGATTCTTATATTCGTGGCGTGTCTCTCAAGGGAAATACATAC 645
Query 661 TGGTTTGCTAGAAATCGGCA---AT--GT--A-ACTTACT----CTGTTTTGATTTCACT 708
||| |||||||| | |||| || | | |||| || |||||||||||||||
Sbjct 646 TGGATTGCTAGAGAGAGGCACGGATACGGCCATACTTTCTTAGTCTGTTTTGATTTCACA 705
Query 709 AGAGAGAGATTTGGGCCATGTTTGCCTCTGCCGTTTCAGTT-T-TATTATTCAGATACTG 766
|||||||||||| || | |||| ||||||||| |||| | | || || |||||| |
Sbjct 706 AGAGAGAGATTTAGGTCGCGTTTACCTCTGCCGAGTCAGCCGTGTGTT-TT-AGATACCG 763
Query 767 TCAGTCTATCTAGTGTCAGAGAAGAGCAGCTTGCGGTTTTATTTCAATGCTCCTA-TACA 825
| |||||||||||||| ||||||||||||||||| ||||||||||| ||||| | ||||
Sbjct 764 TGAGTCTATCTAGTGTTAGAGAAGAGCAGCTTGCTGTTTTATTTCAGTGCTCA-AGTACA 822
Query 826 TT--A----CAGAT--G---AA-AA------TTGAGCCCTAT-CGGGTGTCGTGGAACAG 866
|| | ||||| | || || |||||||| || ||| ||| |||||||||
Sbjct 823 TTGGAGATGCAGATCTGGGTAACAACCAAAATTGAGCCCAATGCGG-TGTTGTGGAACAG 881
Query 867 AAAGGTGTTCTTAGCAGTGGATATGAACCCACTTGTTTCCTTTCAGTTTCAGGTTAGTGC 926
|||||||||||||| ||||||||| || ||||| | || |||||||| ||||| ||
Sbjct 882 CAAGGTGTTCTTAGCTGTGGATATGCACTCACTTAAGT--TT-CAGTTTCAAGTTAGAGC 938
Query 927 TGCGAGTTTCTTCATTGACGAGGAGAATAAAGTCGCCGTTGTTTTTGATAAAGACAAAGA 986
| |||||||||| || ||||||||||| | ||| | ||||||||||||||||| ||| |
Sbjct 939 TTCGAGTTTCTTTATCGACGAGGAGAAGAGAGTTGTTGTTGTTTTTGATAAAGA-AAA-A 996
Query 987 AGGTTTAATGAAC--CCTACTCGCAACGTAGCTTACATCGTTGGAGTGGATGGAATCTTG 1044
| || | | | | ||| |||||||| |||||||||||||||||||||||||| || |
Sbjct 997 CG-TT-ATTTAGCGTCCT-CTCGCAACAAAGCTTACATCGTTGGAGTGGATGGAACCTGG 1053
Query 1045 GAAGAAGTGGATCTTGGAGTATCTGCAGCCAAATTTTGTT-ACCCACTTGTGTGCTCTTA 1103
||| ||||||| |||||| | |||| || ||||||| ||| |||||||||||||||||||
Sbjct 1054 GAACAAGTGGACCTTGGAATGTCTGTAGACAAATTT-GTTTACCCACTTGTGTGCTCTTA 1112
Query 1104 TGTTCCGAGTTTAGTGCA 1121
|||||| |||||||||||
Sbjct 1113 TGTTCCAAGTTTAGTGCA 1130
> AT3G23420.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8386273-8387324 REVERSE LENGTH=858
Length=858
Score = 322 bits (174), Expect = 5e-87
Identities = 435/556 (78%), Gaps = 38/556 (7%)
Strand=Plus/Plus
Query 55 GGC-GAGGAGGTGCTCTGTAGAATTCCGTTGACATCTCTGAGAAAAGTCCGATCTACTTG 113
||| ||||||||||| | ||| ||||| |||||||||| |||| | |||||| ||||||
Sbjct 3 GGCGGAGGAGGTGCTTTCTAGGGTTCCGATGACATCTCTAAGAAGACTCCGATTTACTTG 62
Query 114 CAAAAAGTGGAACACTTTATTCAAAGGTG-A-GAGCTTTGCGAAGAAGTACCTTG-GTGA 170
||||||||||||||||||| || || || | ||||||||| |||||| |||||| ||
Sbjct 63 CAAAAAGTGGAACACTTTA-TC-TAGATGTAGGAGCTTTGCAAAGAAGCACCTTGTTTG- 119
Query 171 TCAAGCAAAAGTAGCAGCAACGGAAAA-AGAGTTTATGATGGTCATGATGATGGATTTTA 229
||||||||||||||| |||| ||||| ||||| || | |||||||||||||||||||||
Sbjct 120 TCAAGCAAAAGTAGCTGCAA-AGAAAAGAGAGTATAAGGTGGTCATGATGATGGATTTTA 178
Query 230 GGGTTTATTTGATGCGCGTCAATCTTCACAATGACGTT-AAGTCATGTATAATGCGTGAA 288
||||||||||||||||| | |||||||| || ||||| || | ||||||| |||||||
Sbjct 179 GGGTTTATTTGATGCGCATAAATCTTCAGAACAACGTTGAATTG-TGTATAAAGCGTGAA 237
Query 289 GGTGAACTTGTTAGCTTAGAAGATGAAG-TCAA-TGTA--TC--TCAAGTCTTTCACTGC 342
|||||||| || | || | | || |||| | || || ||| ||||||||||||
Sbjct 238 CGTGAACTTCTTTTCCCCGACGCTTCAGATCAAATTTACGTCCGTCACGTCTTTCACTGC 297
Query 343 GACGGTTTATTGTTATGCATTATGGAAGATAATACTAGGGTTGTTGTTTGGAACCCGTAT 402
|||||||||||||||||||| ||| |||| || ||||| |||| ||||| |||||||||
Sbjct 298 GACGGTTTATTGTTATGCATCATGAAAGACAACCCTAGGCTTGTGGTTTGTAACCCGTAT 357
Query 403 TGGGGGCAAACCCGGTTGATCGAGTCTA-AGCATGATT-TCCAAAAAATTT-ATTCGTAT 459
| || |||||||||| ||||||| ||| | || || || | | | || || | |||
Sbjct 358 AGTGGACAAACCCGGTGGATCGAGACTACAA-ATAATCCTC-AGAGA-TTAGATGCATAT 414
Query 460 AT-GTATGCTCTCGGATACGAGAAG-AGCAGCAAGTCATGCCGCATCTACAAAATCTTG- 516
| |||||||||||||||| | | | || | ||| || | |||| | | |||
Sbjct 415 -TCGTATGCTCTCGGATACAATA-GCAGTACCAAATCCCACAAAATCTTGAGT-T-TTGG 470
Query 517 -A-GATTTATTGATTTT-TCTCC-C-ACTTATGTTGAGTTTAAAATCTACGA-TATTAAC 570
| ||| | |||||| | ||||| | |||| || |||||| ||||||||||| | |||||
Sbjct 471 TATGATGT-TTGATTATGTCTCCTCCACTTCTGCTGAGTTCAAAATCTACGACT-TTAAC 528
Query 571 TCTAATTCATGGAGGG 586
||| | ||||||||||
Sbjct 529 TCTGACTCATGGAGGG 544
> AT3G22770.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:8047684-8048667 REVERSE LENGTH=984
Length=984
Score = 263 bits (142), Expect = 3e-69
Identities = 698/943 (74%), Gaps = 132/943 (14%)
Strand=Plus/Plus
Query 271 TCATGTATAATGCGTGAAGGTGAACTTGTTAGCTTAGAAGATGAAG-TCA--ATGTATCT 327
|||||||||| ||||||| | || || ||||||||| || |||| | | || |||||
Sbjct 91 TCATGTATAAAACGTGAAGCTAAAGTTATTAGCTTAGGCGACGAAGTTGATGATATATCT 150
Query 328 CAAGTCTTTCACTGCGACGGTTTATTGTTATGCATTA---TGG---AAGATAATACTAGG 381
||||||||||||||||||||||||||||||||||| | | ||| || ||||||
Sbjct 151 CAAGTCTTTCACTGCGACGGTTTATTGTTATGCATCAGCATCACCCAAGCCAAGACTAGG 210
Query 382 GTTGTTGTTTGGAACCCGTATTGGGGGCAAACCCGGTTGATCGAGTCTA-AGCATGATTT 440
| || ||||||||||||||||||||||| ||||||| |||||| | | | ||| | ||
Sbjct 211 CTCGTGGTTTGGAACCCGTATTGGGGGCATACCCGGTCAATCGAGCCCACA-CATCAGTT 269
Query 441 CCAAAAAATTT-ATT-CGTATATGT-ATGCTCTCGGATACGAGAAGAGCAGCAAGTCATG 497
| || ||||| | | ||| | | |||||||||||||||| ||||||||||| ||
Sbjct 270 C-AACAAATTCGACAGC-TAT-TCTTATGCTCTCGGATACGACAAGAGCAGCAA---AT- 322
Query 498 CCGCATCTACAAAATCTTGAGATTTATTGA-TT-TTTCT--CCC-ACTTATGTTGAGTTT 552
|| || | | ||| ||||||| | |||| | || ||| ||| | || | ||||||
Sbjct 323 CC-CA-C-A-AAA-TCTTGAGGTGTATT-ACTTGTTTGAGACCCCATTT-TCATGAGTTC 375
Query 553 AAAATCTACGATATTAACTCTAATTCATGGAGGGATCTTGATGTCATCACTCCATACTGT 612
| |||||||||| ||||||||||||||||||||| | || |||||| | |||| ||||
Sbjct 376 ATAATCTACGATTTTAACTCTAATTCATGGAGGGTTTTTCATGTCA-C--TCCAGACTGG 432
Query 613 AAGATATACG--CTCATCG-TCGTGGTGTCTCTGTCAAGGGAAATACGTACTGGTTTGCT 669
| || || | || || | |||| || ||| ||||||||||| | | |||| |||||
Sbjct 433 CA-AT-TAGGGACT-ATTAATAGTGGCGTGTCTCTCAAGGGAAATGCCTTCTGGGTTGCT 489
Query 670 -A-GA-AA-T----CGG--CAA-TGTAAC----------TT------ACTCTGTTTTGAT 702
| || || | || ||| || ||| || ||||| |||||||
Sbjct 490 GAAGAGAAGTATTACGAAACAAGTGAAACAAACGAAGAGTTTTTCTTACTCTCTTTTGAT 549
Query 703 TTCACTAGAGAGAGATTTGGGCCA-TGTTTGCCTCTGCCGTTTCAGTTTTATT-ATTC-- 758
||||| ||||||| |||||| ||| | ||||||||| |||||||||||| || | ||
Sbjct 550 TTCACAAGAGAGACATTTGGACCACT-TTTGCCTCTTCCGTTTCAGTTTG-TTGAATCTG 607
Query 759 A-GATACTGTCAGTCTATCTAGTGTCAGAGAAGAGCAGCTTGCGGTTTTATTTCAATGCT 817
| ||| || | ||| |||| | ||| ||||| ||||||||||| ||||||| ||| ||
Sbjct 608 AAGATGCTTTGAGTGTATCCAATGTTAGAGACGAGCAGCTTGCTGTTTTATATCA--GC- 664
Query 818 CCT---ATACATTAC--A-G-A--T--G----A-----AA-ATTGAGCCCTATCG-GGTG 855
| | |||||||| | | | | | | || ||||||||| | || ||||
Sbjct 665 CGTGGGATACATTAATGATGGAGATCTGGGTCACGTCTAAGATTGAGCCCAA-CGCGGTG 723
Query 856 TCGTGGAACAGAAAGGTGTTCTTAGCAGTG-G-ATATGAAC-C-CACTTGTTTCCTTTCA 911
|| |||||||| |||||||||||| ||||| | ||| ||| | || ||| ||| ||
Sbjct 724 TCTTGGAACAGCAAGGTGTTCTTATCAGTGAGTATAAGAAAACTCA-TTGGC-CCT--CA 779
Query 912 GTTTCAGGTTAGTGCTGCG-AGTTTCTTCATTGACGAGGAGAATAAAGTCGCCGTTGTTT 970
||||||| || || || | ||||||||||||||||||||||| |||||||| |||||||
Sbjct 780 GTTTCAGTTTTGTT-TGGGGAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTTGTTT 838
Query 971 TTGATAAAGACAAAGAAGGTTTAATGAACCCTACTCGCAACGTAGCTTACATCGTTGGAG 1030
||||||||| | | | | ||| | | | ||| || ||||||||||| ||||||
Sbjct 839 TTGATAAAGGCTAC-A-G----AAT-A-C---AG-CGCTACATAGCTTACATCATTGGAG 886
Query 1031 TGGATGGAATCT-TGGAAGAAGTGGATCTTGGAGTATCTG-CAGCCAAATTTTGTTACCC 1088
|||||||| || || |||||||||||||||||| ||| | ||| || | |||||||
Sbjct 887 TGGATGGA-TCCATGAAAGAAGTGGATCTTGGAGAATCAGACAG--AAGGT--GTTACCC 941
Query 1089 ACTTGTGTGCTCTTATGTTCCGAGTTTAGTGCACCTTTAATTA 1131
| ||||||| ||||||||||| ||| ||||||| ||| |||||
Sbjct 942 AATTGTGTGGTCTTATGTTCCAAGTCTAGTGCAACTT-AATTA 983
> AT3G19470.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:6749524-6751014 FORWARD LENGTH=1388
Length=1388
Score = 252 bits (136), Expect = 6e-66
Identities = 209/243 (86%), Gaps = 9/243 (4%)
Strand=Plus/Plus
Query 28 AAGATGTCCAATCTTCCCAGCGATTTGGGC-GAGGAGGTGCTCTGTAGAATTCCGTTGAC 86
||||||| ||||||||| || ||||| | | |||||||||||||||||||||||||||||
Sbjct 137 AAGATGTACAATCTTCCAAGAGATTT-GCCGGAGGAGGTGCTCTGTAGAATTCCGTTGAC 195
Query 87 ATCTCTGAGAAAAGTCCGATCTACTTGCAAAAAGTGGAACACTTTATTCAAAGGTGAGAG 146
||||||||| ||||||||||||||||||||||||| |||||||| |||| ||| |||
Sbjct 196 ATCTCTGAGGCCTGTCCGATCTACTTGCAAAAAGTGGAGCACTTTATCCAAATGTGGGAG 255
Query 147 CTTTGCGAAGAAGTACCTTGGTGATCAAGCAAAAGTAGC-AGCA-ACGGAAAAAGAGTTT 204
|||||| |||||| |||||| | |||||||||||| | |||| ||| ||| ||||||
Sbjct 256 CTTTGCAAAGAAGCACCTTGCT---CAAGCAAAAGTA-CTAGCAGACGCAAAG-GAGTTT 310
Query 205 ATGATGGTCATGATGATGGATTTTAGGGTTTATTTGATGCGCGTCAATCTTCACAATGAC 264
||| ||||| |||||||| |||||||||||||||||||| | ||||||||||| || ||
Sbjct 311 ATGGTGGTCTTGATGATGAATTTTAGGGTTTATTTGATGAGAGTCAATCTTCAAAACAAC 370
Query 265 GTT 267
|||
Sbjct 371 GTT 373
> AT5G28527.1 | Symbols: | pseudogene, hypothetical protein |
chr5:10513366-10514577 FORWARD LENGTH=1212
Length=1212
Score = 171 bits (92), Expect = 2e-41
Identities = 661/909 (73%), Gaps = 145/909 (16%)
Strand=Plus/Plus
Query 311 ATGAAGT-CAATGTATCTCAAGTCTTTCACTGCGACGGTTTATTGTTATGCATTATGGAA 369
||||||| ||| |||||| |||| ||||||||||||||||||||||||||||||| ||
Sbjct 348 ATGAAGTCCAA-GTATCTAAAGTTTTTCACTGCGACGGTTTATTGTTATGCATTACAAAA 406
Query 370 GATAATACTAGGGTTGTTGTTTGGAACCCGTATTGGGGGCAAACCCGGTTGATCGAGTCT 429
|| |||||| | | | |||||||||||||||||||| |||||| || |||||| |
Sbjct 407 GACCATACTAAGCTCCTAGTTTGGAACCCGTATTGGGGTCAAACCAAGTGGATCGAACCC 466
Query 430 A-AGCATGATTTCCAAAA-AATTT-A-TTCGTATAT-GTATGCTCTCGGATACGAGAAGA 484
| | ||| | ||| | | || | | || |||| | |||||| | |||||||| ||||
Sbjct 467 ATA-CAT-ACTTC-ATACCAACTGGAATT-GTAT-TCGTATGCGATTGGATACGACAAGA 521
Query 485 GCAGCAAGTCATGCCGCATCTACAAAATCTTGAGATTTA-TTGATT--T-TT-CTCC--C 537
||||| | || || | ||||||||||||| ||| |||||| | || | || |
Sbjct 522 GCAGCC-G-CA-GC----T--ACAAAATCTTGAG-TTTCCTTGATTCATATTAC-CCAAC 570
Query 538 -AC-TTATGTTGAGTTT-AAAATCTACGA-TATTAACTCTAATTCATGGAGGG-ATCTTG 592
|| || |||||| | | ||||||||||| | | |||||| ||||||||||| | ||||
Sbjct 571 TACCTT-TGTTGA-TATCAAAATCTACGAGTGT-AACTCTGGTTCATGGAGGGTA-CTTG 626
Query 593 ATGTCA-TCACTCCATACTGTAAGATATACGCTCATCGTCG-TGGTGTCTCTGTCAAGGG 650
||||| | ||||| || | || || | | | || | | ||| |||||| |||||||
Sbjct 627 ATGTCGCTG-CTCCAGACGGGCAGGTAGATGATTAT-GAGGGTGGAGTCTCTCTCAAGGG 684
Query 651 AAATACGTACTGGTTTGCTA--GA-AA---T-CGG---CAA---T-G-T-A--AC---T- 688
|||||| |||||||||| || || || | | | ||| | | | | || |
Sbjct 685 AAATACTTACTGGTTTGTTAAAGAGAAGCCTTCAGAAACAACAGTAGGTGAGGACGACTC 744
Query 689 TA-CTC--T--GTTTTGATTTCACTAGAGAGAGATTTGGGCCA-TGTTTGCCTCTGCCGT 742
| || | ||||||||||||| | ||||||||||||||| | ||||||||| ||||
Sbjct 745 TTTCTTAGTATGTTTTGATTTCACAAAAGAGAGATTTGGGCCGCT-TTTGCCTCTACCGT 803
Query 743 TTCAGTTTTATTATTCAGATACTGTCAGTCTATCTAGTGTCAGAGAAGAGCAGCTTGCGG 802
|| ||| ||| | |||||| | || |||||||||||| ||||| |||||||||||||
Sbjct 804 TTGAGTGGTATCCTGAAGATACCGCCACTCTATCTAGTGTTAGAGAGGAGCAGCTTGCGG 863
Query 803 TTTTATTTCA---ATGCT-C-C-T--AT-----ACATTACAGATGA--A--AA--TTGAG 843
|||||||| | ||| | | | || | || || ||| | | || |||||
Sbjct 864 TTTTATTTTAGCGATGGGACACATCGATGTGGGAGAT-ACGGATAACTACTAAGATTGAG 922
Query 844 CCCTATCG-GGTGTCGTGGAACAGAAAGGT-GTTCTTAGCAGTGGAT-ATGAAC-C-CAC 898
||| | || ||||||||||| | | | ||||||| ||||| || | |||| | |||
Sbjct 923 CCCAA-CGCGGTGTCGTGGA---G---G-TCGTTCTTAACAGTGAATGA-GAACACTCAC 973
Query 899 TTG-TTT--C-----CTTTCAGTTT-CAGGTTAGTGCTGCGA-GTTTCTTCATTGACGAG 948
||| ||| | |||||| ||| | ||||| | || || ||||||| |||||||||
Sbjct 974 TTGCTTTGGCTTTGGCTTTCAATTTGC-GGTTACAGGTG-GAAGTTTCTTTATTGACGAG 1031
Query 949 GAGAATAAAGTCGCCGTTGTTTTTGATAAAG---ACAAAGA--A----GGTT-TA-ATGA 997
||||| ||||||| || ||||||| ||||| ||||||| | |||| || | |
Sbjct 1032 GAGAAGGAAGTCGCGGTGGTTTTTGGTAAAGTCTACAAAGACGAAAATGGTTATACA--A 1089
Query 998 ACC-CTACTCGCAACGTAGCTTA-CATCGTTGGAGTGGATGGAATC-TTGGAAGAAGTGG 1054
||| | ||| || | | |||| || |||||||||||||| || ||| || |||||
Sbjct 1090 ACCACCGCTCTCA-CA-A-CTTAGCA--GTTGGAGTGGATGGT-TCCTTGAAAAAAGTGT 1143
Query 1055 ATCTTGGAGTATCTGCAGCC--AAATTTTGTTACCCACTTGTGTGCTCTTATGTTCCGAG 1112
|| |||||| |||| ||| | ||||| |||| |||||||| |||||||||||||| ||
Sbjct 1144 ATGTTGGAGAATCTCCAGACTGAAATT--GTTATCCACTTGT-TGCTCTTATGTTCCAAG 1200
Query 1113 TTTAGTGCA 1121
|||||||||
Sbjct 1201 TTTAGTGCA 1209
> AT2G28280.1 | Symbols: | pseudogene, hypothetical protein |
chr2:12054736-12056452 REVERSE LENGTH=1717
Length=1717
Score = 135 bits (73), Expect = 7e-31
Identities = 159/199 (80%), Gaps = 11/199 (6%)
Strand=Plus/Plus
Query 930 GAGTTTCTTCATTGACGAGGAGAATAAAGTCGCCGTTGTTTTTGAT-AA-AGACAA-AGA 986
|||||||||| ||||||||||||| || ||||| |||||| ||||| || ||| || |||
Sbjct 1366 GAGTTTCTTCGTTGACGAGGAGAAGAAGGTCGCGGTTGTTCTTGATAAAGAGATAATAGA 1425
Query 987 -AGGTTTAATGAACCCTACTCGCAACGTAGCTTACATCGTTGG-AGTGGATGGAATCTTG 1044
| | | | ||| ||||||| | ||||||||| |||| | | |||||||||||
Sbjct 1426 CAAATGTCACCTTCCC-GCTCGCAATATTGCTTACATCATTGGAAAT-AATGGAATCTTG 1483
Query 1045 -GAAGAAGTGGATCTTGGAGTATCT-GCAGCCAAATTTTGTTACCCACTTGTGTGCTCTT 1102
| | ||||||||||||| | |||| | || ||| |||||||||||||||||||||||||
Sbjct 1484 AGTA-AAGTGGATCTTGGCGAATCTAG-AGACAAGTTTTGTTACCCACTTGTGTGCTCTT 1541
Query 1103 ATGTTCCGAGTTTAGTGCA 1121
||||||| || | ||||||
Sbjct 1542 ATGTTCCAAGCTCAGTGCA 1560
> AT5G36200.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:14244106-14246296 REVERSE LENGTH=1416
Length=1416
Score = 115 bits (62), Expect = 9e-25
Identities = 218/289 (75%), Gaps = 28/289 (10%)
Strand=Plus/Plus
Query 838 ATTGAGCCCTATCG-GGTGTCGTGGAACAGAAAGGTGTTCTTAGCAGTGGATATGA-ACC 895
|||||| |||| | ||| || |||||| ||| |||||||||| || ||||||| | |
Sbjct 895 ATTGAG-CCTAAGGAGGTCTCATGGAAC---AAGTTGTTCTTAGCGGTTGATATGATA-C 949
Query 896 CACTTGTTTC-CTTTCAGTTTCAGGTTAGTGCTGCGAGTTTCTTCATTGACGAGGAGAAT 954
||| || || | | | |||||| || || || |||||| |||||||||||| ||||
Sbjct 950 CAC-TG-ATCAC-TGC-TTTTCAGTTTTGTAATGTGAGTTTTTTCATTGACGAGAAGAAG 1005
Query 955 AAAGTCGCCGTTGTTTTTGATAAAGACAAAGAAGGTTTAATGAACCCTACTCGCAACGTA 1014
|| |||| ||| ||| ||| | |||| | || | |||| ||| || ||| ||
Sbjct 1006 AATGTCGTCGTGGTTCTTG-----G-TAAAG-ATGTGT--TGAA---TACACGAAACATA 1053
Query 1015 GCTTACATCGTTGG-AGTGGATGGAAT-CTTGGAAGAAGTGGATCTTGGAGTATCTGCAG 1072
||| | || |||| | | ||||| || ||| || ||||||||||||||| |||| ||
Sbjct 1054 GCTAATATTATTGGAAAT-GATGG-ATACTTTAAACAAGTGGATCTTGGAGAATCTACAA 1111
Query 1073 CCAAATTTTGTTACCCACTTGTGTGCTCTTATGTTCCGAGTTTAGTGCA 1121
||||| |||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1112 ACAAATATTGTTACCCACTTGTGTGCTCTTATGTTCCAAGTTCAGTGCA 1160
> AT5G36730.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:14436317-14437549 FORWARD LENGTH=1233
Length=1233
Score = 100 bits (54), Expect = 2e-20
Identities = 176/232 (76%), Gaps = 20/232 (9%)
Strand=Plus/Plus
Query 30 GATGTCCAATCTTCCCAGCGATTTG-GGCGAGGAGGTGCTCTGTAGAATTCCGTTGACA- 87
||||||||||||||| || |||||| | |||||||| |||| ||| ||||| | | |
Sbjct 6 GATGTCCAATCTTCCAAGAGATTTGTTG-GAGGAGGTACTCTCTAGGGTTCCGGT-AAAG 63
Query 88 TCTCTGAG-AAAAGTCCGATCTACTTGCAAAAAGTGGAACACTTTATTCAAAGGTGAGAG 146
||| | || | ||| |||| ||||| ||||| |||||| ||||| | | ||| ||||
Sbjct 64 TCTAT-AGCAGCAGTGAGATCCACTTGTAAAAATTGGAACTCTTTAACCTACGGTCAGAG 122
Query 147 CTTTGCGAAGAAGTAC-CT-TGGTGATCAAGCAAAAGTAGCAGCAACGGAAAAAGAGTTT 204
||| |||||||| | || |||| | || | || | ||| ||| |||||| ||||||
Sbjct 123 CTTCACGAAGAAG--CTCTATGGT-A--AA--ACAA-TGGCAACAAAGGAAAAGGAGTTT 174
Query 205 ATGATGGTCATGA-TGATGGATTTTAG-GGTTTATTTGATGCGCGTCAATCT 254
|| ||||||||| | ||||| ||| | ||||||||| ||| | ||||||||
Sbjct 175 CTGGTGGTCATGACT-ATGGA-TTTGGAGGTTTATTTAATGAGGGTCAATCT 224
> AT5G36820.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:14495617-14496849 FORWARD LENGTH=1233
Length=1233
Score = 100 bits (54), Expect = 2e-20
Identities = 176/232 (76%), Gaps = 20/232 (9%)
Strand=Plus/Plus
Query 30 GATGTCCAATCTTCCCAGCGATTTG-GGCGAGGAGGTGCTCTGTAGAATTCCGTTGACA- 87
||||||||||||||| || |||||| | |||||||| |||| ||| ||||| | | |
Sbjct 6 GATGTCCAATCTTCCAAGAGATTTGTTG-GAGGAGGTACTCTCTAGGGTTCCGGT-AAAG 63
Query 88 TCTCTGAG-AAAAGTCCGATCTACTTGCAAAAAGTGGAACACTTTATTCAAAGGTGAGAG 146
||| | || | ||| |||| ||||| ||||| |||||| ||||| | | ||| ||||
Sbjct 64 TCTAT-AGCAGCAGTGAGATCCACTTGTAAAAATTGGAACTCTTTAACCTACGGTCAGAG 122
Query 147 CTTTGCGAAGAAGTAC-CT-TGGTGATCAAGCAAAAGTAGCAGCAACGGAAAAAGAGTTT 204
||| |||||||| | || |||| | || | || | ||| ||| |||||| ||||||
Sbjct 123 CTTCACGAAGAAG--CTCTATGGT-A--AA--ACAA-TGGCAACAAAGGAAAAGGAGTTT 174
Query 205 ATGATGGTCATGA-TGATGGATTTTAG-GGTTTATTTGATGCGCGTCAATCT 254
|| ||||||||| | ||||| ||| | ||||||||| ||| | ||||||||
Sbjct 175 CTGGTGGTCATGACT-ATGGA-TTTGGAGGTTTATTTAATGAGGGTCAATCT 224
> AT3G22940.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:8131468-8132706 FORWARD LENGTH=1239
Length=1239
Score = 69.4 bits (37), Expect = 7e-11
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 1082 GTTACCCACTTGTGTGCTCTTATGTTCCGAGTTTAGTGCA 1121
||| ||||||||||||||||||||||||||||||||||||
Sbjct 1055 GTTGCCCACTTGTGTGCTCTTATGTTCCGAGTTTAGTGCA 1094
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56375212035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5