BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930560

Length=2258
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G11350.1 | Symbols:  | Pentatricopeptide repeat (PPR) superf...   128    2e-28


> AT3G11350.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfamily 
protein | chr3:3558495-3560078 FORWARD LENGTH=1080
Length=1080

 Score =  128 bits (69),  Expect = 2e-28
 Identities = 116/139 (83%), Gaps = 2/139 (1%)
 Strand=Plus/Plus

Query  564  TAAGGTCGATGAGATTCTGCGAGAGATGAAGGAGAGCAACATTAAGCTTGATAGAGACAC  623
            ||||||||| |||| |||||||||||||||||||||||||||| | || ||| |   |||
Sbjct  447  TAAGGTCGACGAGAGTCTGCGAGAGATGAAGGAGAGCAACATTGATCTCGATCGTCTCAC  506

Query  624  CGTGAACAATGCTTTGCGAGTATACGCTGATGTAACTCACATAGC-GACAATGGAGAAGT  682
            ||||||||| ||||||||||| ||||||| || | || |  | || | ||||||||| ||
Sbjct  507  CGTGAACAAAGCTTTGCGAGTGTACGCTGCTGCATCTGATGTGGCAG-CAATGGAGAGGT  565

Query  683  TTCTTGCTGAATGGGAAGG  701
            |||| ||||| ||||||||
Sbjct  566  TTCTGGCTGATTGGGAAGG  584



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 112047616440


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5