BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930567
Length=1079
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24050.1 | Symbols: | Domain of unknown function (DUF313) ... 1338 0.0
AT3G25182.1 | Symbols: | Pseudogene of AT5G24050; DNA binding ... 1288 0.0
AT3G24850.1 | Symbols: | Domain of unknown function (DUF313) ... 869 0.0
> AT5G24050.1 | Symbols: | Domain of unknown function (DUF313)
| chr5:8128353-8129402 REVERSE LENGTH=1050
Length=1050
Score = 1338 bits (724), Expect = 0.0
Identities = 954/1060 (90%), Gaps = 35/1060 (3%)
Strand=Plus/Plus
Query 21 ATGACTAGTCTGTATCAC-A--AT-TCTGATCATCTCACGGCTTCAGGGAAGGACCTGTG 76
||||||||| | |||||| | || | |||||||||||||||||||| || ||||||||
Sbjct 1 ATGACTAGTATCTATCACGATGATGAC-GATCATCTCACGGCTTCAGGTAAAGACCTGTG 59
Query 77 GTTGAATTTCTGTGTACTGGTTGATGCGGCAGTTATGTTATAT---------GAAGAAGA 127
|| ||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 60 GTCGAATTTCTGTGTACTGGTTGATGCGGCGGTTATGTTATATGAAGAAGAAGAAGAAGA 119
Query 128 ACAACGTCGTAAGATTGTCTCCGAAGAAGAAGAAG-AGGCACAGCAGAGAATCTTTTGTC 186
||||||||||||||||||||| ||||||||||||| | | ||| |||||||||||||||
Sbjct 120 ACAACGTCGTAAGATTGTCTCTGAAGAAGAAGAAGAATTC-CAGAAGAGAATCTTTTGTC 178
Query 187 TCTTCCCGAGAAAAACAAGATCGTCTTTGGTGAAGAGACAACAAAAGCTTAATGGGGTTT 246
|||||||||||||||||||||||||||||||||||||||||||||| |||| | |||
Sbjct 179 TCTTCCCGAGAAAAACAAGATCGTCTTTGGTGAAGAGACAACAAAATCTTATTAGGG--- 235
Query 247 CTACTTCTACTTCTTCATCGCTTATCGATCTTAACCAGTTCCCTACTGATTCTGAGA-C- 304
| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 236 -T--TTCTACTTCTTCATCGCTTATCGATCTTAACCAGTTCCCTACCGATTCTGAGATCG 292
Query 305 -AGA---ACAAAACCATCTTC-AGTTGCTATCTTCTTCATGTTTCA-T--CGCTGATTCC 356
||| |||||||||||||| || |||||| ||||||||||||| | |||| |||||
Sbjct 293 AAGACCCACAAAACCATCTTCAAG-GGCTATCCTCTTCATGTTTCATTGCCGCTAATTCC 351
Query 357 GAGATGAAAACCCTACAAAACCCTAGTTCTGAATCTTGTTCTTCACTCGTACTCTTTGAT 416
|||| ||||| |||||||||||||||| ||| ||||||||||||||| |||||||| |
Sbjct 352 GAGACAAAAACATTACAAAACCCTAGTTCAGAACCTTGTTCTTCACTCGGACTCTTTGGT 411
Query 417 TACAAGACGGCTGAGT-CCGAGAAGACGGAGACGAAAGACCCACTAAACCGTAATTTCCC 475
||||||||||||||| || | |||||||||||||||||||||| ||||| |||||||||
Sbjct 412 CACAAGACGGCTGAGTACC-AAAAGACGGAGACGAAAGACCCACCAAACCCTAATTTCCC 470
Query 476 ATGTTCTATGTCTTTGTGCCTAACGGAGAACACAAGCCGCAAGAGACGTGCTGTGGAACA 535
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 471 ATGTACTATGTCTTTGTGCCTAATGGAGAACACAAGCCGCAAGAGACGTGCTGTGGAACA 530
Query 536 GAGGAAACGTTCTGGTGGAGTCAAGAAAGCAAAGGTTGCTTGTTCTTCAGGGACGGCGCC 595
||||| ||| ||||||||||||||||||||| |||||| || |||| ||||||
Sbjct 531 AAGGAAGCGTAGTGGTGGAGTCAAGAAAGCAAATGTTGCTCCTTTTTCACAAACGGCGAG 590
Query 596 AGAGACACCTGAGTGGCTTGTCAAGGTGATGAGAGACATGAAAGAAGCTAAAGACGCTAA 655
|||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||
Sbjct 591 AGAGACACCTGAGTGGCTTGTCAAGGTGATGACAAACATGAAAGAAGCCAAAGACGCTAA 650
Query 656 ACTGATCTTTGAGAAGACACTGTTCGTGACTGATGTAAACCCAACACAGAACCGTCTCTC 715
| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 651 ATTGATCTTTGAGAAGACTCTGTTCGTGACTGATGTAAACCCAACAAAGAACCGTCTCTC 710
Query 716 AATGCCTTTCAACAACTTACTCCGCAACGATTTTTTGACACCAGTAGAGTCCAGAATCAT 775
|||||||||||||||||||||||| |||||||| |||| | || ||||||| ||||||
Sbjct 711 AATGCCTTTCAACAACTTACTCCGAAACGATTTCCTGACGTCTGTGGAGTCCATAATCAT 770
Query 776 AAACGAAGACATCAACAACAATAAGAAGATTGGAGTGGGAGCGATTCTCGTTGATCAACG 835
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 771 AAACGAAGACATCAACAACAATAACAAGATTGGAGTGGGAGCGATTCTCGTGGATCAACG 830
Query 836 GTGTGAAAAGTGGGGTGTGATGTTGAAGAGATGGGAGATGAAGAAGGAATCAGGTAAAGG 895
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 831 GTGTAAAAAGTGGGGTGTGATGTTAAAGAGATGGGAGATGAAGAAGGAATCAGGTAAAGG 890
Query 896 AAGCTGGAATTACAATTTGATTTGTGGGTGGAACGATATCGTTGAGGCTAATGGATTGAA 955
|||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 891 AAGCTGGAGTTACAATTTGATTTGTGGGTGGAACGACATCGTTGAGGCTAACAGATTGAA 950
Query 956 AGAGGGCGACAACATTAGTCTTTGGTCGTTTAGGTGCTGTGAAATCCTTTGCTTTGCCAT 1015
||| ||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||
Sbjct 951 AGAAGGCGACAACATTACTCTTTGGTCGTTTAGGTGCTGTGGAATCCTCTGCTTTGCCAT 1010
Query 1016 GGAACAGAGTAGCTCTTCCCTTGCTCTCTGTCTCTGCTAA 1055
||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 GGAACAGAGTAGCTCTTCCCTTGCTCTCTGTCTCTGCTAA 1050
> AT3G25182.1 | Symbols: | Pseudogene of AT5G24050; DNA binding
protein | chr3:9171056-9172204 REVERSE LENGTH=1026
Length=1026
Score = 1288 bits (697), Expect = 0.0
Identities = 938/1049 (89%), Gaps = 37/1049 (4%)
Strand=Plus/Plus
Query 21 ATGACTAGTCTGTATCACAATTC-TGATCATCTCACGGCTTCAGGGAAGGACCTGTGGTT 79
||||||||| ||||| |||| || ||||||||||| |||||||||||| || ||||||
Sbjct 1 ATGACTAGTATGTATTACAA-TCACGATCATCTCACTGCTTCAGGGAAGAACATGTGGTC 59
Query 80 GAATTTCTGTGTACTGGTTGATGCGGCAGTTATGTTATATGAAGAAG---AACAACGTCG 136
|||||||| ||||||||||||| |||| || |||||||||||||||| ||||||||||
Sbjct 60 GAATTTCTATGTACTGGTTGATACGGCGGTGATGTTATATGAAGAAGAAAAACAACGTCG 119
Query 137 TAAGATTGTCTCCGAAGAAGAAGAAGAGGCACAGCAGAGAATCTTTTGTCTCTTCCCGAG 196
|||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 120 TAAGATTGTCTCTGAAGAAGAAGAAGAAACACAGAAGAGAATCTTTTGTCTCTTCCCGAG 179
Query 197 AAAAACAAGATCGTCTTTGGTGAAGAGACAACAAAAGCTTAATGGGGTTTCTACTTCTAC 256
||||||||||||||||||||| |||||||||||||||| |||| | |
Sbjct 180 AAAAACAAGATCGTCTTTGGTAAAGAGACAACAAAAGC---------TTTC-A-----GC 224
Query 257 TTCTTCATCGCTTATCGATCTTAACCAGTTCCCTACTGATTCTGAGA-C--AGA---ACA 310
|||||||||||||||||||||||||||||||||| |||||||||||| | ||| ||
Sbjct 225 TTCTTCATCGCTTATCGATCTTAACCAGTTCCCTTCTGATTCTGAGATCGAAGACCCACT 284
Query 311 AAACCATCTTCAGTTGCTATCTTCTTCATGTTTCAT---CGCTGATTCCGAGATGAAAAC 367
|||||||| ||||||||||||||||||||||||||| |||||||| | || | ||
Sbjct 285 AAACCATCATCAGTTGCTATCTTCTTCATGTTTCATCGCCGCTGATTTC--GA-G---AC 338
Query 368 CCTACAAAACCCTAGTTCTGAATCTTGTTCTTCACTCGTACTCTTTGATTACAAGACGGC 427
||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||
Sbjct 339 ACTACAAAACCCTAGTTCCGAACCTTGTTCTTCACTCGTACTCTTTGATTGCAAGACGGC 398
Query 428 TGAGTCCGAGAAGACGGAGACGAAAGACCCACTAAACCGTAATTTCCCATGTTCTATGTC 487
|| |||||||||||| |||||||||||||||| ||||| ||||||||||||| || ||||
Sbjct 399 TGGGTCCGAGAAGACAGAGACGAAAGACCCACCAAACCCTAATTTCCCATGTCCTCTGTC 458
Query 488 TTTGTGCCTAACGGAGAACACAAGCCGCAAGAGACGTGCTGTGGAACAGAGGAAACGTTC 547
|||||||||||||||||||| || |||||||||||||||||||||||||||||| ||| |
Sbjct 459 TTTGTGCCTAACGGAGAACAAAAACCGCAAGAGACGTGCTGTGGAACAGAGGAAGCGTAC 518
Query 548 TGGTGGAGTCAAGAAAGCAAAGGTTGCTTGTTCTTCAGGGACGGCGCCAGAGACACCTGA 607
|||||||||||||||||||||||||||| || |||| |||||| |||||| |||||
Sbjct 519 TGGTGGAGTCAAGAAAGCAAAGGTTGCTCCTTTTTCACAAACGGCGAGAGAGACGCCTGA 578
Query 608 GTGGCTTGTCAAGGTGATGAGAGACATGAAAGAAGCTAAAGACGCTAAACTGATCTTTGA 667
|||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 579 GTGGCTTGTCAATGTGATGAGAGACATGAAAGAAGCCAAAGACGCTAAATTGATCTTTGA 638
Query 668 GAAGACACTGTTCGTGACTGATGTAAACCCAACACAGAACCGTCTCTCAATGCCTTTCAA 727
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 GAAGACTCTGTTCGTTACTGATGTAAACCCAACACAGAACCGTCTCTCAATGCCTTTCAA 698
Query 728 CAACTTACTCCGCAACGATTTTTTGACACCAGTAGAGTCCAGAATCATAAACGAAGACAT 787
||||||||||||||||||||| ||||| | || ||||| ||||||||| || |||||||
Sbjct 699 CAACTTACTCCGCAACGATTTCTTGACTTCTGTGGAGTCAAGAATCATAGACAAAGACAT 758
Query 788 CAACAACAATAAGAAGATTGGAGTGGGAGCGATTCTCGTTGATCAACGGTGTGAA-AAGT 846
||| ||| |||||||||||||||||||||||||||| || |||||||||||| || ||||
Sbjct 759 CAAAAACGATAAGAAGATTGGAGTGGGAGCGATTCTTGTGGATCAACGGTGT-AAGAAGT 817
Query 847 GGGGTGTGATGTTGAAGAGATGGGAGATGAAGAAGGAATCAGGTAAAGGAAGCTGGAATT 906
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 GGGGTGTGATGTTAAAGAGATGGGAGATGAAGAAGGAATCAGGTAAAGGAAGCTGGAATT 877
Query 907 ACAATTTGATTTGTGGGTGGAACGATATCGTTGAGGCTAATGGATTGAAAGAGGGCGACA 966
||||| | || ||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 878 ACAATCTAATCTGTGGGTGGAACGATATTGTTGAGGCTAATGGATTGAAAGAAGGCGACA 937
Query 967 ACATTAGTCTTTGGTCGTTTAGGTGCTGTGAAATCCTTTGCTTTGCCATGGAACAGAGTA 1026
|||||||||||||||| || |||| ||||| |||||| |||||||||||||||||||| |
Sbjct 938 ACATTAGTCTTTGGTCATTCAGGTCCTGTGGAATCCTCTGCTTTGCCATGGAACAGAGAA 997
Query 1027 GCTCTTCCCTTGCTCTCTGTCTCTGCTAA 1055
|| ||||||||||||||||||||||||||
Sbjct 998 GCCCTTCCCTTGCTCTCTGTCTCTGCTAA 1026
> AT3G24850.1 | Symbols: | Domain of unknown function (DUF313)
| chr3:9071105-9072184 FORWARD LENGTH=1080
Length=1080
Score = 869 bits (470), Expect = 0.0
Identities = 625/697 (90%), Gaps = 21/697 (3%)
Strand=Plus/Plus
Query 362 GAAAACCCTACAAAACCCTAGTTCTGAATC-TTGTTCTTCACTCGTACTCTTTGATTACA 420
|||||||||||||||||||||||||||| | |||||| ||||||||||||| ||||||||
Sbjct 402 GAAAACCCTACAAAACCCTAGTTCTGAA-CTTTGTTCATCACTCGTACTCTCTGATTACA 460
Query 421 AGACGGCTGAGTCCGAGAAGACGGAGACGAAAGACCCACTAAACCGTAATTTCCCATGTT 480
||| ||||||||| || |||| |||||||||||| || | ||| || ||| |
Sbjct 461 AGATGGCTGAGTCGGAAAAGATGGAGACGAAAGA-CC-C---ACC--AA--ACCC----T 507
Query 481 CTATGTCTTTGTGCCTAACGGAGAACACAAGCCGCAAGAGACGTGCTGTGGAACAGAGGA 540
| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 508 C--TGTCTTTGTGCCTAACGGGGAACACAAGCCGCAAGAGACGTGCTGTGGAAGAGAGGA 565
Query 541 AACGTTCTGGTGGAGTCAAGAAAGCAAAGGTTGCTTGTTCTT-CAGGGACGGCGCCAGAG 599
||||| | |||||| ||||||| |||||||||||| || || ||||||| ||| |||
Sbjct 566 AACGTACCGGTGGATTCAAGAAGGCAAAGGTTGCTCCTT-TTCCAGGGACAGCGAGAGAT 624
Query 600 ACACCTGAGTGGCTTGTCAAGGTGATGAGAGACATGAAAGAAGCTAAAGACGCTAAACTG 659
|| ||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 625 ACGCCTAAGTGGCTTGTCAAGGTGATGAGAGACATGAAAGAAGCCAAAGATGCTAAACTG 684
Query 660 ATCTTTGAGAAGACACTGTTCGTGACTGATGTAAACCCAACACAGAACCGTCTCTCAATG 719
|||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 685 ATCTTTGAGAAGACTCTGTTTGTGACTGATATAAACCCAACACAGAACCGTCTCTCAATG 744
Query 720 CCTTTCAACAACTTACTCCGCAACGATTTTTTGACACCAGTAGAGTCCAGAATCATAAAC 779
|| |||||||||||||||| |||||||| ||||| | || |||||||||||||||||
Sbjct 745 CCGTTCAACAACTTACTCCAAAACGATTTCTTGACGTCTGTGGAGTCCAGAATCATAAAG 804
Query 780 GAAGACATCAACAACAATAAGAAGATTGGAGTGGGAGCGATTCTCGTTGATCAACGGTGT 839
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 805 GAAGACATCAACAACAATAAGAAGATTGGAGTGGGAGCGATTCTCGTGGATCAACGGTCT 864
Query 840 GAAAAGTGGGGTGTGATGTTGAAGAGATGGGAGATGAAGAAGGAATCAGGTAAAGGAAGC 899
| ||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||
Sbjct 865 GTAAAGTGGGGTGTGATGTTGAAAAGATGGGAGCTGAAGAAGGAATCAGGAAAAGGAAGC 924
Query 900 TGGAATTACAATTTGATTTGTGGGTGGAACGATATCGTTGAGGCTAATGGATTGAAAGAG 959
||||| |||||| |||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 925 TGGAACTACAATCTGATTTGTGGGTGGAACGATGTCGTTGAGGCTAACGGATTGAAAGAA 984
Query 960 GGCGACAACATTAGTCTTTGGTCGTTTAGGTG-CTGTGAAATCCTTTGCTTTGCCATGGA 1018
||||||||||||||| |||||||||| ||||| | ||| | |||||||||||||||||||
Sbjct 985 GGCGACAACATTAGTGTTTGGTCGTTCAGGTGTC-GTGGAGTCCTTTGCTTTGCCATGGA 1043
Query 1019 ACAGAGTAGCTCTTCCCTTGCTCTCTGTCTCTGCTAA 1055
||||||||||||||| |||||||||||||||||||||
Sbjct 1044 ACAGAGTAGCTCTTCTCTTGCTCTCTGTCTCTGCTAA 1080
Score = 331 bits (179), Expect = 8e-90
Identities = 373/457 (82%), Gaps = 51/457 (11%)
Strand=Plus/Plus
Query 21 ATGACTAGTCTGTATCACAATT-CTGATCATCTCACGGCTTCAGGGAAGGACCTGTGGTT 79
|||| |||| |||||||| ||| | ||||||||||||||||||||||||| ||||||||
Sbjct 1 ATGAGTAGTATGTATCACGATTAC-GATCATCTCACGGCTTCAGGGAAGGGCCTGTGGTC 59
Query 80 GAATTTCTGTGTACTGGTTGATGCGGCAGTTATGTTATATGAAGAAGA-ACAACGTCGT- 137
||| |||| || |||||| |||||||| ||| |||||||||| | ||| ||||||||||
Sbjct 60 GAAGTTCTATGGACTGGTGGATGCGGCGGTTTTGTTATATGATG-AGATACAACGTCGTG 118
Query 138 --AAGATTGTCTCCGAAGAAGAAGAAGAGGCACAGCAGAGAATCTTTTGTCTCTTCCCGA 195
||||| || | | ||||||||| | || ||| ||||||| ||||||||||||||||
Sbjct 119 GCAAGATCGTAT-C--TGAAGAAGAA-A-GC-CAGAAGAGAATATTTTGTCTCTTCCCGA 172
Query 196 GAA-AAACAAGATCGTCTTTGGTGAAGAGACAACAAAAGCTTAATGG-GGTTTCTA-CT- 251
||| ||| ||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 173 GAAGAAA-AAGATCGTCTTTGGTGAAGAGACAACAAAAGCTTAATGGTGGTTT-TATCTC 230
Query 252 TCT-ACTTCTTCATCGCTTATCGATCTTAACCAGTTCCCTACTGATTCTGAGA-CAGAAC 309
| | |||||||||||||||||||||||||||||||| || ||||||||||||| | |||
Sbjct 231 TTTTACTTCTTCATCGCTTATCGATCTTAACCAGTTGCCGACTGATTCTGAGATC-GAAG 289
Query 310 AAAACCATCTTCAGTTGCTATCTTCTTCATGTTTCATCGCTGATTCCGAGATGAAAACCC 369
| ||| | | | | || | || ||| | | ||| || | || |||
Sbjct 290 AC--CCA-CA--A------A-C--CT-C-TGATTC--C-CAGAT---GA-A--AA--CCC 322
Query 370 TACAAAACCCTAGTTCTGAATCTTGTTCTTCACTCGTACTCTTTGATTACAAGACGGCTG 429
|||||||| ||||||||||| |||| ||||||||||||||||||||||||| |||||||
Sbjct 323 TACAAAACTCTAGTTCTGAACCTTGCACTTCACTCGTACTCTTTGATTACAAAACGGCTG 382
Query 430 AGTCCGAGAAGACGGAGACGAAAGACCC-ACTAAACC 465
|||||||||||| |||| ||||| |||| || |||||
Sbjct 383 AGTCCGAGAAGATGGAGGCGAAA-ACCCTACAAAACC 418
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52861173885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5