BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930570

Length=449
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G22730.1 | Symbols:  | F-box and associated interaction doma...  76.8    2e-13
  AT3G22700.1 | Symbols:  | F-box and associated interaction doma...  69.4    3e-11


> AT3G22730.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr3:8031341-8032459 REVERSE LENGTH=1119
Length=1119

 Score = 76.8 bits (41),  Expect = 2e-13
 Identities = 87/109 (80%), Gaps = 4/109 (4%)
 Strand=Plus/Plus

Query  27   GATCATCTCTGATCTTCCGTGGGATTTGGTAGAGGAAATACTCTCTAGGACTTTGATA-A  85
            ||| || || |||||| | | ||||||||||||||||||||||||||||  ||  |   |
Sbjct  3    GATGATGTCCGATCTTTCTTTGGATTTGGTAGAGGAAATACTCTCTAGGG-TTCCAGCCA  61

Query  86   CTTCTCTCAGAGCGGTTG-GATCCACTTGCAAACGATGGAACACTTTAT  133
            | ||||||| | || ||  |||| |||||||||| ||||||| ||||||
Sbjct  62   CATCTCTCAAA-CGATTACGATCTACTTGCAAACTATGGAACGCTTTAT  109


> AT3G22700.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr3:8024798-8025814 REVERSE LENGTH=1017
Length=1017

 Score = 69.4 bits (37),  Expect = 3e-11
 Identities = 83/105 (79%), Gaps = 4/105 (4%)
 Strand=Plus/Plus

Query  38   ATCTTCCGTGGGATTTGGTAGAGGAAATACTCTCTAGGACTTTGATA-ACTTCTCTCAGA  96
            ||||||| | ||||||||||||||||||||||||||||  ||  |   || ||||||| |
Sbjct  8    ATCTTCCTTTGGATTTGGTAGAGGAAATACTCTCTAGGG-TTCCAGCCACATCTCTCAAA  66

Query  97   GCGGTTG-GATCCACTTGCAAACGATGGAACACTTTATCCAAAGA  140
             || ||  |||| ||||| | || ||||||| ||||||  |||||
Sbjct  67   -CGATTACGATCGACTTGTAGACAATGGAACGCTTTATTGAAAGA  110



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21363793325


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5