BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930580
Length=1579
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58860.1 | Symbols: CYP86A1, CYP86 | cytochrome P450, family... 2518 0.0
> AT5G58860.1 | Symbols: CYP86A1, CYP86 | cytochrome P450, family
86, subfamily A, polypeptide 1 | chr5:23765814-23768049 REVERSE
LENGTH=1779
Length=1779
Score = 2518 bits (1363), Expect = 0.0
Identities = 1513/1585 (95%), Gaps = 12/1585 (1%)
Strand=Plus/Plus
Query 1 AAAAAGCCTAAACCGGGAAAATGGTAGCTCTAAACCCTATCTTAACCGGCTACGCCGTGG 60
|||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||
Sbjct 33 AAAAAGCCTAAACCGGGATAATGGAAGCTCTAAACTCTATCTTAACCGGCTACGCCGTGG 92
Query 61 CCGCCCTATCAGTCTACGCTCTTTGGTTCTACTTCCTGTCCCGAAGACTAACCGGTCCCA 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 93 CAGCCCTATCAGTCTACGCTCTTTGGTTCTACTTCCTGTCCCGAAGACTAACCGGTCCCA 152
Query 121 AAGTCTTACCGTTCGTAGGAAGCTTACCGTATCTAATCGCAAACCGGAGCCGAATTCACG 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 153 AAGTCTTACCGTTCGTAGGAAGCTTACCGTATCTAATCGCTAACCGGAGCCGAATTCACG 212
Query 181 ATTGGATCGCTGATAATCTCCGAGCAACTGGTGGTACGTATCAAACATGCACCATGGTGA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 213 ATTGGATCGCTGATAATCTCCGAGCAACTGGTGGTACGTATCAAACATGCACCATGGTGA 272
Query 241 TACCTTTTTCGTGGCCAAGACG---G--TTTTACACCGTGACGTGTCACCCAAAAAACGT 295
||||||| ||| |||||| || | |||||||| |||||||||||||||||||||||
Sbjct 273 TACCTTT--CGTAGCCAAGGCGCAAGGGTTTTACACTGTGACGTGTCACCCAAAAAACGT 330
Query 296 CGAGCATATCCTTAAGACACGGTTTGACAACTATCCGAAAGGTCCGATGTGGCGAGCTGC 355
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 331 CGAGCATATCCTTAAGACACGGTTCGACAACTATCCGAAAGGTCCGATGTGGCGCGCTGC 390
Query 356 TTTCCACGACCTGTTAGGACAAGGAATCTTTAACAGCGACGGTGACACGTGGCTTATGCA 415
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 391 TTTCCACGACCTGTTAGGACAAGGAATCTTCAACAGCGACGGTGACACGTGGCTCATGCA 450
Query 416 ACGTAAGACTGCAGCGCTTGAGTTCACTACTAGAACTCTTCGACAAGCCATGGCTCGGTG 475
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 451 ACGTAAGACTGCAGCGCTTGAGTTCACAACTAGAACTCTTAGACAAGCCATGGCTCGGTG 510
Query 476 GGTTAATGGGACTATCAAGAACCGGTTATGGCTTATATTAGACCGGGCGGTTAAAAACAA 535
|||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 511 GGTTAACGGGACTATCAAGAACCGGTTATGGCTTATATTAGACCGTGCGGTTCAAAACAA 570
Query 536 CAAACCGGTTGATCTTCAAGATTTGTTTTTGAGGTTAACTTTTGACAACATTTGTGGTCT 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 CAAACCGGTTGATCTTCAAGATTTGTTTTTGAGGTTAACTTTTGACAACATTTGTGGTCT 630
Query 596 GACTTTTGGAAAAGACCCGGAGACGCTCTCTCTGGACCTACCGGATAATCCTTTCTCTGT 655
||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 631 GACTTTTGGTAAAGACCCGGAGACGCTCTCTCTGGATCTACCGGATAATCCCTTCTCTGT 690
Query 656 CGCTTTTGACACCGCGACAGAGGCTAC-CTTAAAGCGACTTCTCTACACCGGTTTCTTGT 714
||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||
Sbjct 691 CGCTTTTGACACCGCGACAGAGGCTACTCT-AAAGAGACTTCTCTACACCGGTTTCTTGT 749
Query 715 GGCGAATTCAGAAAGCTATGGGGATTGGATCAGAGGATAAGCTCAAGAAGAGTCTTGAAG 774
|| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 750 GGAGGATTCAGAAAGCTATGGGGATTGGATCAGAAGATAAGCTCAAGAAGAGTCTTGAAG 809
Query 775 TCGTTGAGACTTACATGAACGATGCAATCGACGCTCGGAAAAACTCTCCCTCCGATGATC 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 TCGTTGAGACTTACATGAACGATGCAATCGACGCTCGGAAAAACTCTCCCTCCGATGATC 869
Query 835 TTTTGTCGCGCTTCTTGAAGAAACGTGACGTTAACGGTAACGTTCTTCCGACAGATGTTC 894
||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 870 TTTTGTCACGTTTCTTGAAGAAACGTGACGTTAACGGTAACGTTCTTCCAACAGATGTTC 929
Query 895 TTCAGCGCATCGCGCTTAACTTTGTTCTCGCGGGTCGTGACACTTCTTCTGTGGCCTTGA 954
||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 930 TTCAGCGTATCGCGCTTAACTTTGTTCTCGCGGGCCGTGACACTTCTTCGGTGGCCTTGA 989
Query 955 GTTGGTTCTTCTGGCTCGTCATGAATAACCGGGAGGTGGAAACGAAGATCGTTAACGAGT 1014
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 GCTGGTTCTTCTGGCTCGTCATGAATAACCGGGAGGTGGAAACGAAGATCGTTAACGAGT 1049
Query 1015 TATCGACGGTTCTGAAGGAGACACGTGGCGATGATCAGGAAAAATGGACGGAGGAGCCGT 1074
| |||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1050 TGTCGATGGTTCTGAAGGAGACACGTGGCAATGATCAGGAGAAATGGACGGAGGAGCCGT 1109
Query 1075 TAGAGTTCGACGAAGCAGATAGACTCGTTTACCTCAAAGCTGCTTTGGCTGAAACGCTGC 1134
||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1110 TAGAGTTCGACGAGGCAGATAGGCTCGTTTACCTCAAGGCTGCTTTGGCTGAAACGCTGC 1169
Query 1135 GTTTATATCCTTCTGTGCCTCAGGATTTCAAGTACGTCGTAGACGATGACGTTTTGCCTG 1194
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1170 GTTTATACCCTTCTGTGCCTCAGGATTTCAAATACGTCGTAGACGATGACGTTTTGCCGG 1229
Query 1195 ACGGGACTTTCGTGCCAAGAGGCTCGACGGTGACCTATTCGATTTACTCGATCGGACGTA 1254
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1230 ACGGGACTTTCGTGCCAAGAGGCTCGACGGTGACCTACTCGATTTACTCGATCGGACGTA 1289
Query 1255 TGAAAACGATTTGGGGAGAAGATTGTCTCGATTTCCGTCCAGAGCGGTGGCTCACAGCCG 1314
||||||| |||||||| |||||||||||||| |||||||| || |||||||| |||||||
Sbjct 1290 TGAAAACAATTTGGGGCGAAGATTGTCTCGAGTTCCGTCCGGAACGGTGGCTGACAGCCG 1349
Query 1315 ACGGTGAACGGTTCGAGACTCCCAAAGATGGTTACAAGTTCGTAGCATTCAACGCCGGAC 1374
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1350 ACGGTGAACGGTTTGAGACTCCCAAAGATGGTTACAAGTTCGTAGCGTTCAACGCCGGAC 1409
Query 1375 CAAGGACTTGCTTGGGAAAGGACTTGGCTTACCTTCAGATGAAGTCGGTGGCTTCAGCCG 1434
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1410 CAAGGACTTGCTTGGGAAAGGACTTGGCTTATAATCAGATGAAGTCGGTGGCTTCAGCCG 1469
Query 1435 TTCTCCTCCGTTACCGGGTATTTCCGGTTCCCGGTAACCGCGTTGAACAAAAGATGTCGC 1494
||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||
Sbjct 1470 TTCTCCTCCGTTACCGGGTTTTTCCGGTTCCCGGTCACCGCGTTGAGCAAAAGATGTCGC 1529
Query 1495 TGACGCTTTTCATGAAGAACGGTTTACGTGTTTACTTGCAACCTCGTGGTGAGGTGGTTG 1554
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 1530 TGACGCTTTTCATGAAGAACGGTTTACGTGTTTATTTGCAACCTCGTGGTGAGGTGCTTG 1589
Query 1555 CATGATTAATTATATTAAGGGTATT 1579
||||||| | || | |||||||||
Sbjct 1590 CATGATTCAC-AT-T-AAGGGTATT 1611
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77961446385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5