BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930582
Length=285
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71830.1 | Symbols: SERK1, ATSERK1 | somatic embryogenesis r... 211 3e-54
> AT1G71830.1 | Symbols: SERK1, ATSERK1 | somatic embryogenesis
receptor-like kinase 1 | chr1:27018158-27022117 FORWARD LENGTH=2570
Length=2570
Score = 211 bits (114), Expect = 3e-54
Identities = 127/133 (95%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 102 GTGGGTATGGTATAACTGGAGCAATAGCTGGTGGAGTTGCTGCAGGTGCTGCTTTGCTGT 161
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1112 GTGGGTATGGTATAACTGGAGCAATAGCTGGTGGAGTTGCTGCAGGTGCTGCTTTGCTCT 1171
Query 162 TTGATGCTCCTGCAATAGCCTTTGCTTG-TAGGCGACGAAGAAAGCCACAAGATATTTTC 220
||| |||||||||||||||||||||||| | |||||||||||||||||| ||||||||||
Sbjct 1172 TTGCTGCTCCTGCAATAGCCTTTGCTTGGT-GGCGACGAAGAAAGCCACTAGATATTTTC 1230
Query 221 TTTGATGTCCCTG 233
|| ||||||||||
Sbjct 1231 TTCGATGTCCCTG 1243
Score = 62.1 bits (33), Expect = 3e-09
Identities = 33/33 (100%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 1 GTTTTGCTAATAACTTAGACCTATGTGGACCTG 33
|||||||||||||||||||||||||||||||||
Sbjct 998 GTTTTGCTAATAACTTAGACCTATGTGGACCTG 1030
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13119882489
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5