BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930597
Length=907
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21130.1 | Symbols: | F-box and associated interaction doma... 198 7e-50
> AT3G21130.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:7408246-7409349 FORWARD LENGTH=1104
Length=1104
Score = 198 bits (107), Expect = 7e-50
Identities = 367/487 (75%), Gaps = 39/487 (8%)
Strand=Plus/Plus
Query 148 GCTTATTGCTATGTGGTACCAAGGACAATAGACTT-GTTGTTTGTAATCCGCT-TTCATG 205
||||||| ||||| | ||||| ||||||||| || |||||||| ||||| | |||| |
Sbjct 344 GCTTATTACTATGCAGCACCAAAGACAATAGA-TTAGTTGTTTGGAATCC-ATGTTCAGG 401
Query 206 TGAAACCAGGTGGATCCAACCCGGAAAG-TCCTACACGACTATC-GAAATTTTTGCTCTC 263
|||||| |||||||||||||| | ||| ||||||| | |||| || || | |||| |
Sbjct 402 TGAAACAAGGTGGATCCAACCTAG-AAGTTCCTACAAG-GTATCAGACATCTATGCTTTA 459
Query 264 GGTTACAATAACAAATCCTCCTGTTATACAATCTTGAGAATGTATCGATTC-CACGA-TG 321
||||| |||||| |||||| ||| | | ||||||||| ||| ||||| || | || |
Sbjct 460 GGTTATGATAACACATCCTCATGTCACAAAATCTTGAGGATGGATCGA-TCTGAGGACCG 518
Query 322 AT-TTCCAA-TCTAGATA-TAAGTACGAAGTCTATGATTTTACCTCTAATTCGTGGAGGG 378
| | |||| || | | | | ||||| |||||||||| ||||||||||| |||||| |
Sbjct 519 -TATCCCAATTC-A-A-ACTGAGTACCAAGTCTATGACTTTACCTCTAAATCGTGGCTAG 574
Query 379 TTGTTGGTGTGACTACCGGCTGGGTCATACCACAG-AGTCAGA-AC--AGACGTGGCATG 434
||| ||||||| || |||| | |||||||| || | | || | ||||||||| ||
Sbjct 575 TTGATGGTGTGGCTGGAGGCTTGTTCATACCA-AGTATTGGGACTCGGAGACGTGGCTTG 633
Query 435 TCTATGAAGGGAAATACTTACTGGCTTG--CTGA-AGAACATGG---G-C--GT-A-AT- 482
||| |||||||||||||||||||||||| || | ||| | || | | | | ||
Sbjct 634 TCTGTGAAGGGAAATACTTACTGGCTTGCTCTTACTGAAGACGGACCGCCATTTGATATG 693
Query 483 TTTTTACTAAGTTTTGATTACACAAGTGA-GACATTCCAATGTTTGTCTCTTCCGGCAGA 541
|| ||| || ||||||||| | | ||| | ||| | | || ||||||||||| | ||
Sbjct 694 TTCTTATTATGTTTTGATTTTTCGACTGACG-GATTTCGACGTCTGTCTCTTCCGACGGA 752
Query 542 TGCTAAGACT-CTTTATCATTATTTGGCTTTATCAGTGACTAGAGAAGAGCAACAACTTT 600
| || | | |||| || || || |||||||||||||||||||||||||||||||||
Sbjct 753 TACTCCTTGTAC-TTATTATGATGTGTCTTTATCAGTGACTAGAGAAGAGCAACAACTTT 811
Query 601 GTATGTT 607
|||||||
Sbjct 812 GTATGTT 818
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44306517654
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5