BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930601

Length=409
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G49040.1 | Symbols: SCD1 | stomatal cytokinesis defective / ...   573    4e-163


> AT1G49040.1 | Symbols: SCD1 | stomatal cytokinesis defective 
/ SCD1 protein (SCD1) | chr1:18139234-18148981 REVERSE LENGTH=3904
Length=3904

 Score =  573 bits (310),  Expect = 4e-163
 Identities = 336/349 (96%), Gaps = 0/349 (0%)
 Strand=Plus/Plus

Query  16    GCTCAAAATGGATGTTGGCCGTGCTGCTTCAAGAAGCGATTTGTCGACAGTGCGGGACGC  75
             ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  2015  GCTCAAAATGGCTGTGGGCCGTGCTGCTTCAAGAAGCGATTTGTCGACAGTGCGGGATGC  2074

Query  76    ACTTGAAGTTTCTGCAGAAATGTTCAAGAAAGATGCCAATAATGTTTCAGACTATGTTCA  135
             |||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct  2075  ACTTGAAGTTTCTGCAGAAATGTTCAAGAAGGATGCCAATAATGTCTCTGACTATGTTCA  2134

Query  136   GCGTCATCTCATCTCCATATCCATCTGGGAGGAGTTGAGATTCTGGGAGGGTTACTTCGA  195
             ||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||
Sbjct  2135  GCGTCATCTCATCTCCATACCCATCTGGGAGGAGTTGAGATTTTGGGAAGGTTACTTCGA  2194

Query  196   GTATCTCATGGAGCAGCCTGCAAATGAATCAGTGAACTATGCTACTTTGGTCACAGCCAG  255
             |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  2195  GTATCTCATGGAGCAGCCTGCAAATGAATCTGTGAACTATGCTACTTTGGTCACAGCCAG  2254

Query  256   GCTAATCATAGTGGCATCACATATGGCTGGCTTGGGACTTCCTGATACAGAAGCTTGGAA  315
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2255  ACTAATCATAGTGGCATCACATATGGCTGGCTTGGGACTTCCTGATACAGAAGCTTGGAA  2314

Query  316   CATGATCGAGACAATAGCAGAGAAACAAAAACTTGGATACAAATTACTG  364
             |||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct  2315  CATGATCGAGACAATAGCAGAGAAACAAAAGCTTGGATATAAATTACTG  2363



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19353083365


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5