BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930609
Length=661
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24830.1 | Symbols: | Ribosomal protein L13 family protein ... 1094 0.0
AT4G13170.1 | Symbols: | Ribosomal protein L13 family protein ... 676 0.0
AT5G48760.1 | Symbols: | Ribosomal protein L13 family protein ... 579 1e-164
AT3G07110.2 | Symbols: | Ribosomal protein L13 family protein ... 553 9e-157
> AT3G24830.1 | Symbols: | Ribosomal protein L13 family protein
| chr3:9064532-9066089 FORWARD LENGTH=920
Length=920
Score = 1094 bits (592), Expect = 0.0
Identities = 641/664 (97%), Gaps = 5/664 (1%)
Strand=Plus/Plus
Query 1 GGCGAAATCGAAGCGAGAAGATGGTGTCTGGGTCAGGGATATGTTCAAAGCGTGTTGTGG 60
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 62 GGCGAATTCGAATCGAGAAGATGGTGTCTGGGTCAGGGATATGTTCAAAGCGTGTCGTTG 121
Query 61 TTGACGCACGTCACCATATGTGTGGTCGTCTTGCTTCGATCACAGCTAAAGAATTGCTCA 120
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 122 TTGACGCACGTCACCATATGTGTGGTCGTCTTGCTTCGATCATAGCTAAAGAGTTGCTCA 181
Query 121 ATGGACAGAGTGTTGTCGTTGTTCGATGTGAGGAGATTTGTTTGTCTGGTGGTTTGGTTC 180
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 182 ATGGACAGAGTGTTGTTGTTGTCCGATGTGAGGAGATTTGTTTGTCTGGTGGTTTGGTTC 241
Query 181 GTCAGAAGATGAAGTACATGAGGTTTCTTAGGAAACGTATGAACACTAAACCTTCTCATG 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 242 GTCAGAAGATGAAGTACATGAGGTTTCTTAGGAAACGCATGAACACTAAACCTTCTCATG 301
Query 241 GTCCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGGATGATTC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 GTCCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGGATGATTC 361
Query 301 CACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAAGGTTTTTGAGGGAGTAC 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 362 CACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAAGGTGTTTGAGGGAGTAC 421
Query 361 CACCTCCTTATGACAAGGTCAAGAGAATGGTCATTCCTGATGCTCTCAAGGTGTTGAGGC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 CACCTCCTTATGACAAGGTCAAGAGAATGGTCATTCCTGATGCTCTCAAGGTGTTGAGGC 481
Query 421 TTCAGGCTGGTCACAAGTACTGCTTGTTGGGACGTCTT-TCTTCTGAAGTTGGCTGGAAC 479
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 482 TTCAGGCTGGTCACAAGTACTGCTTGTTGGGACGT-TTGTCTTCTGAAGTTGGCTGGAAC 540
Query 480 CATTATGATACCATTAAGGAGCTTGAGGTGAAAAGAAAGGAGAGGTCACAAGCTGTGTAT 539
||||| |||||||| ||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 541 CATTACGATACCATCAAGGAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTAT 600
Query 540 GAGCGTAAGAAGCAACTCAACAAGCTCAGGGCAAAGGCCGAGAAGGTTGCAGAGGAGAAA 599
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GAGCGTAAGAAGCAACTCACCAAGCTCAGGGCAAAGGCCGAGAAGGTTGCAGAGGAGAAA 660
Query 600 CTTGGATCCCAGCTCGATGTTCTTGCACCGATTAAGTACTGAA-AA--TCATCATCTATC 656
||||||||||||||||||||||||||| |||| |||||||||| || ||| ||||||||
Sbjct 661 CTTGGATCCCAGCTCGATGTTCTTGCATCGATCAAGTACTGAAGAAAATCAGCATCTATC 720
Query 657 TTTT 660
||||
Sbjct 721 TTTT 724
> AT4G13170.1 | Symbols: | Ribosomal protein L13 family protein
| chr4:7654944-7656594 REVERSE LENGTH=862
Length=862
Score = 676 bits (366), Expect = 0.0
Identities = 548/635 (86%), Gaps = 16/635 (3%)
Strand=Plus/Plus
Query 16 AGAAGATGGTGTCTGGGTCAGGGATATGTTCAAAGCGTGTTGTGGTTGACGCACGTCACC 75
|||||||||||||||||||||||||||| | ||||| ||||| || |||| || ||||
Sbjct 48 AGAAGATGGTGTCTGGGTCAGGGATATGCGCGAAGCGCGTTGTCGTCGACGGGCGACACC 107
Query 76 ATATG-TGTGGTCGTCTTGCTTCGATCACAGCTAAAGAATTGCTCAATGGACA-G-AGTG 132
| ||| | ||||||||| ||||| | ||| || || || || || || ||||| | ||||
Sbjct 108 ACATGCT-TGGTCGTCTAGCTTCCAACACTGCGAAGGAGTTACTTAACGGACAGGAAGTG 166
Query 133 TTGTCGTTGTTCGATGTGAGGAGATTTGTTTGTCTGGTGGTTTGGTTCGTCAGAAGATGA 192
|| ||||| |||||||| ||||||||| | || || ||||||||||| || |||||||
Sbjct 167 --GTTGTTGTCCGATGTGAAGAGATTTGTCTCTCGGGAGGTTTGGTTCGACAAAAGATGA 224
Query 193 AGTACATGAGGTTTCTTAGGAAACGTATGAACACTAAACCTTCTCATGGTCCTATTCA-T 251
|||||||||| || ||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 225 AGTACATGAGATTCCTTAGGAAACGTATGAACACTAAGCCTTCTCATGGTCCTATTCACT 284
Query 252 TTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGGATGATTCCACACAAGACC 311
|| |||||||| || |||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 285 TT-CGTGCTCCTTCCAAGATCTTCTGGCGCACTGTTCGCGGGATGATTCCACACAAGACC 343
Query 312 AAGCGTGGTGCTGCTGCTCTTGCACGTTTGAAGGTTTTTGAGGGAGTACCACCTCCTTAT 371
||||||||||||||||| ||||| || |||||||||||||||||| | |||||||||||
Sbjct 344 AAGCGTGGTGCTGCTGCACTTGCTCGCTTGAAGGTTTTTGAGGGAATCCCACCTCCTTAC 403
Query 372 GACAAGGTCAAGAGAATGGTCATTCCTGATGCTCTCAAGGTGTTGAGGCTTCAG-GCTGG 430
|||||| | ||||||||||| |||||||||||||| ||||| ||||| |||||| | |||
Sbjct 404 GACAAGATTAAGAGAATGGTTATTCCTGATGCTCTTAAGGTTTTGAGACTTCAGAG-TGG 462
Query 431 TCACAAGTACTGCTTGTTGGGACGTCTT-TCTTCTGAAGTTGGCTGGAACCATTATGATA 489
||||||||||||||| ||||||||| || |||||||| ||||||||||||||||||||||
Sbjct 463 TCACAAGTACTGCTTATTGGGACGT-TTATCTTCTGAGGTTGGCTGGAACCATTATGATA 521
Query 490 CCATTAAGGAGCTTGAGGTGAAA-AGAAAGGAGAGGTCACAAGCTG-TGTATGAGCGTAA 547
||||||| || |||||| ||| |||||||| || ||||||| || |||||||||||||
Sbjct 522 CCATTAAAGAACTTGAGAC-AAAGAGAAAGGAAAGATCACAAG-TGATGTATGAGCGTAA 579
Query 548 GAAGCAACTCAACAAGCTCAGGGCAAAGGCCGAGAAGGTTGCAGAGGAGAAACTTGGATC 607
|||||||||||||||||||||| | ||||| ||||||||||| || |||| || |||||
Sbjct 580 GAAGCAACTCAACAAGCTCAGGACCAAGGCAGAGAAGGTTGCGGAAGAGAGGCTCGGATC 639
Query 608 CCAGCTCGATGTTCTTGCACCGATTAAGTACTGAA 642
||||| ||||||||||| ||| | ||||| ||||
Sbjct 640 ACAGCTAGATGTTCTTGCCCCGGTCAAGTATTGAA 674
> AT5G48760.1 | Symbols: | Ribosomal protein L13 family protein
| chr5:19771138-19772722 REVERSE LENGTH=834
Length=834
Score = 579 bits (313), Expect = 1e-164
Identities = 535/641 (83%), Gaps = 20/641 (3%)
Strand=Plus/Plus
Query 10 GAAGCGAGAAGATGGTGTCTGGGTCAGGGATATGTTCAAAGCGTGTTGTGGTTGACGCAC 69
||||||| || |||||||| || ||||||||||| || ||||| ||||| || ||||| |
Sbjct 28 GAAGCGA-AA-ATGGTGTCAGGATCAGGGATATGCTCGAAGCGCGTTGTCGTCGACGCGC 85
Query 70 GTCACCATATG-TGTGGTCGTCTTGCTTCGATCACAGCTAAAGA-ATTGCTCAATGGACA 127
| ||||| ||| | ||| |||||||| |||||||| |||||||| || |||||||| ||
Sbjct 86 GCCACCACATGCT-TGGCCGTCTTGCGTCGATCACCGCTAAAGAGCTT-CTCAATGGCCA 143
Query 128 GAGTGTTGTCGTTGTTCGATGTGAGGAGATTTGTTTGTCTGGTGGTTTGGTTCGTCAGAA 187
|| |||||| |||| || || || |||||||| | || || || | |||||||||||
Sbjct 144 GAAAGTTGTCATTGTCCGGTGCGAAGAGATTTGCCTCTCCGGCGGACTCGTTCGTCAGAA 203
Query 188 GATGAAGTACATGAGGTTTCTTAGGAAACGTATGAACACTAAACCTTCTCATGGTCCTAT 247
||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||
Sbjct 204 AATGAAGTACATGAGGTTTCTTCGCAAACGTATGAACACTAAACCTTCTCATGGACCTAT 263
Query 248 TCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGGATGATTCCACACAA 307
||| ||||||||||| || || |||||||||||||| ||||| || ||||||||||||||
Sbjct 264 TCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGGTATGATTCCACACAA 323
Query 308 GACCAAGCGTGGTGCTGCTGCTCTT-GCACGTTTGAAGGTTTTTGAGGGAGTACC-ACCT 365
||| |||||||| |||||||| || |||||| ||||||| | ||| || || || || |
Sbjct 324 GACGAAGCGTGGAGCTGCTGCA-TTAGCACGTCTGAAGGTATATGAAGGTGTTCCTAC-T 381
Query 366 CCTTATGACAAGGTCAAGAGAATGGTCATTCCTGATGCTCTCAAGGTGTTGAGGCTTCAG 425
|| ||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 382 CCATATGACAAGATCAAGAGGATGGTCATCCCTGATGCTCTCAAGGTGTTGAGGCTTCAA 441
Query 426 GCTGGTCACAAGTACTG-CTTGTTGGGACGTCTTTCTTCTGAAGTTGGCTGGAACCATTA 484
||||||||||| ||||| || ||||| |||||||||||||||||||| |||||||||||
Sbjct 442 GCTGGTCACAAATACTGTCTA-TTGGGCCGTCTTTCTTCTGAAGTTGGGTGGAACCATTA 500
Query 485 TGATACCATTAAGGAGCTTGAGGTGAAA-AGAAAGGAGAG-GTCACAAGCTG-TGTATGA 541
|| ||||| |||||||| ||| ||| || |||||||| | | || | || | || ||
Sbjct 501 CGACACCATCAAGGAGCTGGAGAC-AAAGAGGAAGGAGAGAGCC-CACG-TGGTTTACGA 557
Query 542 GCGTAAGAAGCAACTCAACAAGCTCAGGGCAAAGGCCGAGAAGGTTGCAGAGGAGAAACT 601
||| ||||||||||| ||||| || || | |||||||||||||| || || ||||| ||
Sbjct 558 GCGAAAGAAGCAACTTAACAAACTTAGAGTTAAGGCCGAGAAGGTCGCTGAAGAGAAGCT 617
Query 602 TGGATCCCAGCTCGATGTTCTTGCACC-GATTAAGTACTGA 641
||| | ||||||||| ||||||| || | |||||||||||
Sbjct 618 CGGAGCACAGCTCGATATTCTTGCGCCAG-TTAAGTACTGA 657
> AT3G07110.2 | Symbols: | Ribosomal protein L13 family protein
| chr3:2252019-2253528 FORWARD LENGTH=893
Length=893
Score = 553 bits (299), Expect = 9e-157
Identities = 525/633 (83%), Gaps = 19/633 (3%)
Strand=Plus/Plus
Query 21 ATGGTGTCTGGGTCAGGGATATGTTCAAAGCGTGTTGTGGTTGACGCACGTCACCATATG 80
||||||||||| ||||| || || | ||||| || |||||||| || |||||||| |||
Sbjct 74 ATGGTGTCTGGATCAGGAATTTGCGCGAAGCGCGTGGTGGTTGATGCTCGTCACCACATG 133
Query 81 TGT-GGTCGTCTT-GCTTCGATCACAGCTAAAGAAT-TGCTCAATGGACAGAGTGTTGTC 137
| ||||| ||| |||||| | ||| |||| || |||||||||| |||| | ||||
Sbjct 134 -CTAGGTCG-CTTGGCTTCGGTTGTAGC-AAAGGATCTGCTCAATGGCCAGAATATTGTG 190
Query 138 GTTGTTCGATGTGAGGAGATTTGTTTGTCTGGTGG-TTTGGTTCGTCAGAAGATGAAGTA 196
||||| || || |||||||||||| | || || || || ||||||||||||||||||||
Sbjct 191 GTTGTCCGGTGCGAGGAGATTTGTCTCTCCGGCGGACTT-GTTCGTCAGAAGATGAAGTA 249
Query 197 CATGAGGTTTCTTAGGAAACGTATGAACACTAAACCTTCTCATGGTCCTATTCATTTCCG 256
|||||||||||| | || ||||||||||||||||||||||| || |||||||| |||||
Sbjct 250 CATGAGGTTTCTCCGTAAGCGTATGAACACTAAACCTTCTCACGGACCTATTCACTTCCG 309
Query 257 TGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGGATGATTCCACACAAGACCAAGCG 316
|||||| || ||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 310 TGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGTATGATTCCACACAAGACTAAGCG 369
Query 317 TGGTGCTGCTGCTCTTGCACGTTTGAAGGTTTTTGAGGGAGTACC-ACCTCCTTATGACA 375
||| ||| ||| ||||| || |||||||| ||||| ||||| || || ||| |||||||
Sbjct 370 TGGAGCTAATGCACTTGCCCGCTTGAAGGTCTTTGAAGGAGTTCCTAC-TCCATATGACA 428
Query 376 AGGTCAAGAGAATGGTCATTCCTGATGCTCTCAAGGTGTTGAGGCTTCAGGCTGGTCACA 435
|| ||||||| |||||| ||||||||||||||||||| |||||||| |||||||| ||||
Sbjct 429 AGATCAAGAGGATGGTCGTTCCTGATGCTCTCAAGGTCTTGAGGCTGCAGGCTGGACACA 488
Query 436 AGTACTG-CTTGTTGGGACGTCTTTCTTCTGAAGTTGGCTGGAACCATTATGATACCATT 494
| ||||| || |||||| || |||||||||||||| || |||||||| || || |||||
Sbjct 489 AATACTGTCT-GTTGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATC 547
Query 495 AAG--G-AGCTTGAGGTGAAAAGAAAGGAGAG-GTCACAAGCTGTGTATGAGCGTAAGAA 550
||| | |||| ||| || |||||||| || | | |||||||| |||||| | |||||
Sbjct 548 AAGCAGGAGCTGGAGAACAAGAGAAAGGAAAGAG-CTCAAGCTGTTTATGAGAGAAAGAA 606
Query 551 GCAACTCAACAAGCTCAGGGCAAAGGCCGAGAAGGTTGCAGAGGAGAAACTTGGATCCCA 610
|||||| | ||| ||||| || ||||||||||||||||| || ||||| |||||||| ||
Sbjct 607 GCAACTTAGCAAACTCAGAGCTAAGGCCGAGAAGGTTGCTGAAGAGAAGCTTGGATCTCA 666
Query 611 GCTCGATGTTCTTGCACC-GATTAAGTACTGAA 642
| |||||||||||||| | | ||||||||||
Sbjct 667 ATTGGATGTTCTTGCACCCG-TCAAGTACTGAA 698
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31948917492
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5