BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930617
Length=915
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25050.1 | Symbols: XTH3 | xyloglucan endotransglucosylase/h... 1528 0.0
> AT3G25050.1 | Symbols: XTH3 | xyloglucan endotransglucosylase/hydrolase
3 | chr3:9126851-9128416 FORWARD LENGTH=1092
Length=1092
Score = 1528 bits (827), Expect = 0.0
Identities = 888/917 (97%), Gaps = 5/917 (1%)
Strand=Plus/Plus
Query 1 ACAACAAAAATTAAATCAAAGATGGACTATATGAGAATCTTTAGTGTTTTTGTAGTAACG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACAACAAAAATTAAATCAAAGATGGACTATATGAGAATCTTTAGTGTTTTTGTAGTAACG 60
Query 61 TTATGGATCATAAGGGTTGATGCTAGGGTTTTGGGAGGACGAGGAATCGAAAAATTTGTT 120
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 TTATGGATCATAAGGGTTGATGCTAGGGTTTTCGGAGGACGAGGAATCGAAAAATTTGTA 120
Query 121 ACTTTCGGTCAGAATTATGTTGTTAAGTGGGGACAAAGTCATGTTTCTACACTCCACTCT 180
|||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||
Sbjct 121 ACTTTCGGTCAGAATTATATTGTTACGTGGGGACAAAGTCATGTTTCTACACTCCATTCT 180
Query 181 GGCGAAGAAGTTGATCTCTACATCGATCAATCTTCAGGTGGTGGCTTCGAATCCAAGGAC 240
||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 181 GGCGAAGAAGTTGATCTTTACATGGATCAATCTTCAGGTGGTGGGTTCGAATCCAAGGAC 240
Query 241 AG-CTACGGATCAGGTCTCTTTGAAATGAGAATCAAAGTGCCTGGAGGAAATACTGGCGG 299
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 -GCCTACGGATCAGGTCTCTTTGAAATGAGAATCAAAGTGCCTTCAGGAAATACTGGCGG 299
Query 300 CATCGTCACCGCGTTTTACTTGACGTCGAAAGGAGGTGGTCACGACGAGATTGACTTCGA 359
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CATCGTCACCGCTTTTTACTTGACGTCGAAAGGAGGTGGTCACGACGAGATTGACTTCGA 359
Query 360 GTTTCTAGGGAACAACAATGGAAAACCGGTAACGTTACAGACAAATCTGTTTCTGAATGG 419
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 360 GTTTCTAGGGAACAACAACGGAAAACCGGTAACGTTACAGACAAATCTGTTTCTAAATGG 419
Query 420 AGAAGGAAACAGAGAAGAGAGGTTTTTGCTTTGGTTCAATCCAACCAAACACTACCACAC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGAAGGAAACAGAGAAGAGAGGTTTTTGCTTTGGTTCAATCCAACCAAACACTACCACAC 479
Query 480 TTATGGGCTTCTTTGGAACCCTTACCAAATTGTGTTTTACGTGGACAACATCCCAATAAG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTATGGGCTTCTTTGGAACCCTTACCAAATTGTGTTTTACGTGGACAACATCCCAATAAG 539
Query 540 AGTATACAAAAACGAAAACGGTGTAAGCTATCCATCAAGGCCTATGCAAGTCGAGGCTAG 599
||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||
Sbjct 540 AGTATACAAAAACGAAAACGGCGTAAGTTATCCATCAAAGCCTATGCAAGTCGAGGCTAG 599
Query 600 TCTCTGGAACGGTGACGATTGGGCGACTGATGGTGGTCGGACTAAGGTTAACTGGTCATA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TCTCTGGAACGGTGACGATTGGGCGACTGATGGTGGTCGGACTAAGGTTAACTGGTCATA 659
Query 660 CTCTCCTTTCATTGCCCATTTCCGAGACTTCGCCTTATCCGGTTGCAACATAGATGGTCG 719
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 660 CTCTCCTTTCATTGCACATTTCCGAGACTTCGCCTTATCCGGCTGCAACATAGATGGTCG 719
Query 720 GAGTAATAATGTGGGCGCTTGTGAATCCTCCAACTACTGGTGGAATGCAGGCAAGTATCA 779
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 720 GAGTAATAATGTCGGCGCTTGTGAATCCTCCAACTACTGGTGGAATGCAGGCAACTATCA 779
Query 780 AAGATTAAGCGGAAACGAACAGAAACTTTATGAGCATGTGAGGAGCAAGTACATGAACTA 839
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 780 AAGATTAAGCGGAAACGAACAGAAACTTTATGAACATGTGAGGAGCAAGTACATGAACTA 839
Query 840 TGACTATTGTACTGACCGGTCTAAGTACCAAACTCCTCCTAGAGAATGTTATTGAAATAA 899
||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||
Sbjct 840 TGACTATTGTACTGATCGCTCTAAGTACCAAACTCCTCCTAGAGAATGTTATTGAAGTAA 899
Query 900 CATA-A--CGTTAATTA 913
|||| | |||||||||
Sbjct 900 CATATATACGTTAATTA 916
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44708390830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5