BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930618

Length=463
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G25060.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like s...   606    5e-173


> AT3G25060.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like 
superfamily protein | chr3:9128516-9130321 FORWARD LENGTH=1806
Length=1806

 Score =  606 bits (328),  Expect = 5e-173
 Identities = 420/464 (91%), Gaps = 8/464 (2%)
 Strand=Plus/Plus

Query  1    ACAGACAAAACCATTTCTGCATGTTACAACATCGGACTCTCCTGTGTCCGAATCGCATCA  60
            |||||||||| ||||||||||||||   |||||||||||||||||||||||| |||||||
Sbjct  6    ACAGACAAAA-CATTTCTGCATGTT---ACATCGGACTCTCCTGTGTCCGAAACGCATCA  61

Query  61   AATTTCTGCTATCCGTTAGTAAATTCAAGCGACACATCACTCAGATCCACGCTTTCGTAA  120
            ||||||||| |||| ||  |||| ||||||| ||||||||||||||||||||||| ||||
Sbjct  62   AATTTCTGCAATCCATTTCTAAACTCAAGCGGCACATCACTCAGATCCACGCTTTTGTAA  121

Query  121  TTACTACTGGTAATTTACTCAATGGAAGCTCCATTAGTCGCGATCTCATTGCTTCATGTG  180
            | | ||||||||||||||| ||||||||||| |||||||| |||||||| ||||||||||
Sbjct  122  TCAGTACTGGTAATTTACTTAATGGAAGCTCTATTAGTCGAGATCTCATCGCTTCATGTG  181

Query  181  GACTAATCGGGGAGATTTCTTATGCACGTAAGGTGCTCGACGAATTGCCTCAGAGAAGTG  240
            ||| |||||| ||||| |||||||||||||||||| ||||||||||||| |||||  |||
Sbjct  182  GACGAATCGGTGAGATCTCTTATGCACGTAAGGTGTTCGACGAATTGCCGCAGAGGGGTG  241

Query  241  TTTCTGTTTATAACTCCATGATTGTGGTTTATTCTCGTGGAAACAACCCAGATGAGGTTT  300
            ||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct  242  TTTCTGTTTATAATTCCATGATTGTGGTTTATTCTCGTGGAAAAAATCCAGATGAGGTTT  301

Query  301  TACGACTTTATGATCAGATGATTGCTGAAAAGGTCCAACCAGATAGCTCGACTTTCACTA  360
            | |||||||||||||||||||| ||||||||  | |||||||||||||| || |||||||
Sbjct  302  TGCGACTTTATGATCAGATGATAGCTGAAAAAATTCAACCAGATAGCTCAACGTTCACTA  361

Query  361  TGACGATCAAAGCGTGTTTGAGTGGTATGGCTTTAGAGAAAGGAGAGGCTGTGTGGCT-T  419
            |||||||||||||||| || |||||| ||| ||||||||||||||||||||||||| | |
Sbjct  362  TGACGATCAAAGCGTGCTTAAGTGGTTTGGTTTTAGAGAAAGGAGAGGCTGTGTGG-TGT  420

Query  420  AAAGCCAGTGGAATTTGGGTATAAAAATCGATGTCTTTGTTTGT  463
            ||||| |||||| ||||||||||||||| |||||||||||||||
Sbjct  421  AAAGC-AGTGGACTTTGGGTATAAAAAT-GATGTCTTTGTTTGT  462



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22067541811


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5