BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930626
Length=860
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25160.1 | Symbols: | ER lumen protein retaining receptor f... 1382 0.0
> AT3G25160.1 | Symbols: | ER lumen protein retaining receptor
family protein | chr3:9160168-9162067 REVERSE LENGTH=1032
Length=1032
Score = 1382 bits (748), Expect = 0.0
Identities = 827/865 (96%), Gaps = 6/865 (1%)
Strand=Plus/Plus
Query 1 GAGATTTGTAATAATCATATCATGGGGAAGAGAAGAGGTGTCTCCGCCGTGAACATGGTT 60
||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||
Sbjct 24 GAGATTTGTAATAATCAAATCATGGGGAAGAGAAGAGGTGTCTCCGCCGTGAACGTTGTT 83
Query 61 TTCGGGTGGCTAAGACAACAATCGAACAAGGTTAAGATAGCTTTAGGAATTATCATCTCT 120
||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 84 TTCGGGTGGCTGCGACAACAATCGAACAAGGTTAAAATAGCTTTAGGAATTATCATCTCT 143
Query 121 TTGATCCTCGTCGTGT-TTCTGAAATTCACCGTTAGGAATCACAATCACTTTTTCATCGC 179
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 144 TTGATCCTCGTCGT-TCTTCTGAAATTCACCGTTAGGAATCACAATCACTTTTTCATCGC 202
Query 180 CTCCGAGCTCATCCACGCCACCGGAATCTTGATCCTTATCTACAAACTCACTCGCCAAAA 239
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 203 CTCCGAGCTCATCCACGCCGCCGGAATCTTGATCCTCATCTACAAACTCACTCGCCAAAA 262
Query 240 GACTTGCTCCGGTCTTTCTCTAAAGTCTCAAGAAGTGACAGCAATATTTCTAGCTGTGAG 299
||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||
Sbjct 263 GACTTGCTCCGGTCTTTCTTTAAAATCTCAAGAAGTGACAGCAATATTTCTAGCGGTGAG 322
Query 300 ATTGATATGCAGCATAAACATGGAAGGGGATATCCATACAGTTCTCGATTTCGCCACCTT 359
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 323 ATTGATATGCAGCATAAACATGGAAGGTGATATCCATACAGTTCTCGATTTCGCCACCTT 382
Query 360 GGTTTCGACTCTATGGGTCATTTATATGATTCGATACAAGCTGAAAGCATCTTATATAAA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 383 GGTTTCGACTCTATGGGTCATTTATATGATTCGATACAAGCTGAAAGCATCTTATATAAA 442
Query 420 GTCTCTAGACACTTGCTACAATTACTATGTGCTTGTACCATCAGCTATCCTTGCGTTGGT 479
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 443 GTCTCTCGACACTTGCTACAATTACTATGTGCTTGTACCATCTGCTATCCTTGCGTTGAT 502
Query 480 TATCAACCCGAGTACGAGTTATTCTTACTTCCACCGTATCTTGTGGGCGTTTTGCGTTTA 539
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 503 TATTAACCCGAGTACGAGTTATTCTTACTTCCACCGTATATTGTGGGCGTTTTGCGTCTA 562
Query 540 CACAGAATCTGTCTCTGTTCTACCTCAGCTTCGATTGATGCAAAATGCTCAGATCATAGA 599
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 563 CACAGAATCTGTCTCTGTTCTACCTCAACTTCGATTAATGCAAAATGCTCAGATCATAGA 622
Query 600 GCCTTTCACAGCTCATTACGTGTTTGCGCTCGGAATAGCTAGATTCTTGGCATGCGCTCA 659
|||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||
Sbjct 623 GCCTTTCACAGCTCATTATGTGTTTGCACTCGGAATAGCTAGATTCCTGGCATGCGCTCA 682
Query 660 CTGGATTATCCAGGTCGTTGAAACTCGTGGACATTACCTATGGCTGCTCGGGGCTGGTTA 719
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 683 TTGGATTATCCAGGTCGTTGAGACTCGTGGACATTACCTATGGCTACTCGGGGCTGGTTA 742
Query 720 CTTTTGGTTCCCGGTTGCTCTAATAGCCGAGATCGTTCAAACCTTCATCCTCGCCGACTT 779
||| ||||| ||||| |||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 743 CTTCTGGTTTCCGGTGGCTCTACTAGCCGAGATCGTTCAAACTTTCATCCTCGCCGACTT 802
Query 780 TTGCTACTACTATGTCAAAAGTGTTATGGAGGGTCAGCTTGTACTGAAGATGCCGGTTTA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 TTGCTACTACTATGTCAAAAGTGTTATGGAGGGTCAGCTTGTACTGAAGATGCCGGTTTA 862
Query 840 A-ATTA---AGTATAAAATGAACCA 860
| || | ||||||||||||||||
Sbjct 863 AGATCATCTAGTATAAAATGAACCA 887
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41945512745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5