BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg930626 Length=860 Score E Sequences producing significant alignments: (Bits) Value AT3G25160.1 | Symbols: | ER lumen protein retaining receptor f... 1382 0.0 > AT3G25160.1 | Symbols: | ER lumen protein retaining receptor family protein | chr3:9160168-9162067 REVERSE LENGTH=1032 Length=1032 Score = 1382 bits (748), Expect = 0.0 Identities = 827/865 (96%), Gaps = 6/865 (1%) Strand=Plus/Plus Query 1 GAGATTTGTAATAATCATATCATGGGGAAGAGAAGAGGTGTCTCCGCCGTGAACATGGTT 60 ||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||| Sbjct 24 GAGATTTGTAATAATCAAATCATGGGGAAGAGAAGAGGTGTCTCCGCCGTGAACGTTGTT 83 Query 61 TTCGGGTGGCTAAGACAACAATCGAACAAGGTTAAGATAGCTTTAGGAATTATCATCTCT 120 ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 84 TTCGGGTGGCTGCGACAACAATCGAACAAGGTTAAAATAGCTTTAGGAATTATCATCTCT 143 Query 121 TTGATCCTCGTCGTGT-TTCTGAAATTCACCGTTAGGAATCACAATCACTTTTTCATCGC 179 |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 144 TTGATCCTCGTCGT-TCTTCTGAAATTCACCGTTAGGAATCACAATCACTTTTTCATCGC 202 Query 180 CTCCGAGCTCATCCACGCCACCGGAATCTTGATCCTTATCTACAAACTCACTCGCCAAAA 239 ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| Sbjct 203 CTCCGAGCTCATCCACGCCGCCGGAATCTTGATCCTCATCTACAAACTCACTCGCCAAAA 262 Query 240 GACTTGCTCCGGTCTTTCTCTAAAGTCTCAAGAAGTGACAGCAATATTTCTAGCTGTGAG 299 ||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||| Sbjct 263 GACTTGCTCCGGTCTTTCTTTAAAATCTCAAGAAGTGACAGCAATATTTCTAGCGGTGAG 322 Query 300 ATTGATATGCAGCATAAACATGGAAGGGGATATCCATACAGTTCTCGATTTCGCCACCTT 359 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 323 ATTGATATGCAGCATAAACATGGAAGGTGATATCCATACAGTTCTCGATTTCGCCACCTT 382 Query 360 GGTTTCGACTCTATGGGTCATTTATATGATTCGATACAAGCTGAAAGCATCTTATATAAA 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 383 GGTTTCGACTCTATGGGTCATTTATATGATTCGATACAAGCTGAAAGCATCTTATATAAA 442 Query 420 GTCTCTAGACACTTGCTACAATTACTATGTGCTTGTACCATCAGCTATCCTTGCGTTGGT 479 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| | Sbjct 443 GTCTCTCGACACTTGCTACAATTACTATGTGCTTGTACCATCTGCTATCCTTGCGTTGAT 502 Query 480 TATCAACCCGAGTACGAGTTATTCTTACTTCCACCGTATCTTGTGGGCGTTTTGCGTTTA 539 ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 503 TATTAACCCGAGTACGAGTTATTCTTACTTCCACCGTATATTGTGGGCGTTTTGCGTCTA 562 Query 540 CACAGAATCTGTCTCTGTTCTACCTCAGCTTCGATTGATGCAAAATGCTCAGATCATAGA 599 ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 563 CACAGAATCTGTCTCTGTTCTACCTCAACTTCGATTAATGCAAAATGCTCAGATCATAGA 622 Query 600 GCCTTTCACAGCTCATTACGTGTTTGCGCTCGGAATAGCTAGATTCTTGGCATGCGCTCA 659 |||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||| Sbjct 623 GCCTTTCACAGCTCATTATGTGTTTGCACTCGGAATAGCTAGATTCCTGGCATGCGCTCA 682 Query 660 CTGGATTATCCAGGTCGTTGAAACTCGTGGACATTACCTATGGCTGCTCGGGGCTGGTTA 719 |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 683 TTGGATTATCCAGGTCGTTGAGACTCGTGGACATTACCTATGGCTACTCGGGGCTGGTTA 742 Query 720 CTTTTGGTTCCCGGTTGCTCTAATAGCCGAGATCGTTCAAACCTTCATCCTCGCCGACTT 779 ||| ||||| ||||| |||||| ||||||||||||||||||| ||||||||||||||||| Sbjct 743 CTTCTGGTTTCCGGTGGCTCTACTAGCCGAGATCGTTCAAACTTTCATCCTCGCCGACTT 802 Query 780 TTGCTACTACTATGTCAAAAGTGTTATGGAGGGTCAGCTTGTACTGAAGATGCCGGTTTA 839 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 803 TTGCTACTACTATGTCAAAAGTGTTATGGAGGGTCAGCTTGTACTGAAGATGCCGGTTTA 862 Query 840 A-ATTA---AGTATAAAATGAACCA 860 | || | |||||||||||||||| Sbjct 863 AGATCATCTAGTATAAAATGAACCA 887 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41945512745 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5