BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930627
Length=272
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25165.1 | Symbols: RALFL25 | ralf-like 25 | chr3:9163340-91... 254 4e-67
> AT3G25165.1 | Symbols: RALFL25 | ralf-like 25 | chr3:9163340-9163893
REVERSE LENGTH=554
Length=554
Score = 254 bits (137), Expect = 4e-67
Identities = 233/276 (84%), Gaps = 19/276 (7%)
Strand=Plus/Plus
Query 4 aaa-aaaaaaaaaaaaaaaaTGAAGACATTTATGATAATCTTGTTGGTGATTTGTAGCAT 62
||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 49 AAACAAAAAGAAGAAAAAAATGAAGACATTTATGATAATCTTGTTGGTGATTTGTAGCAT 108
Query 63 ATTGATTGCAGGACGAGTTGAAGCTAACAATCCCAAGAGGAAATATTTAAATCCGGGTAT 122
||||||| |||||||||||| |||||| || |||||| |||||| || | ||
Sbjct 109 CTTGATTGTAGGACGAGTTGAGGCTAACGATAACAAGAGAAAATATCTA---C----TA- 160
Query 123 TCTCAATCCATGCTTGCGTCCTAATGCTC-ATAAAGGATGTCAGCGTCCTC-AGTATAGA 180
||| |||||||||||||||||||||||| | | |||||||| |||| | | |||| |
Sbjct 161 -CTCGATCCATGCTTGCGTCCTAATGCTCCACCA-GGATGTCATCGTCAGCCA-TATAAA 217
Query 181 CCACGTACTCCGGTAAAC-TCATATAGTCGTGGCTGCTCCACAATCAACCGATGCCGCCG 239
|| ||||||||||| ||| | |||||||||||| ||| ||||||||||||||||||||||
Sbjct 218 CCCCGTACTCCGGTTAACGT-ATATAGTCGTGGTTGCACCACAATCAACCGATGCCGCCG 276
Query 240 A---CAGACTCCATGAGATCTAATGGCATATTTTAT 272
| |||| ||| |||||||||||| ||||||||||
Sbjct 277 AGTGCAGAATCCGTGAGATCTAATGACATATTTTAT 312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12466401752
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5