BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930628

Length=273
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G25170.1 | Symbols: RALFL26 | ralf-like 26 | chr3:9165744-91...   422    1e-117


> AT3G25170.1 | Symbols: RALFL26 | ralf-like 26 | chr3:9165744-9166253 
REVERSE LENGTH=510
Length=510

 Score =  422 bits (228),  Expect = 1e-117
 Identities = 258/273 (95%), Gaps = 0/273 (0%)
 Strand=Plus/Plus

Query  1    TCAACATATTAATTGACTAAAAATGAAGGCATGGATGATAATCTTGTTGGTGATTTGTGT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  27   TCAACATATTAATTGACTAAAAATGAAGGCATGGATGATAATCTTGTTGGTGATTTGTGT  86

Query  61   CGCTGTGATGGTGGAGCAATCAGAGGCTCGCAAAGCCCGAAAGTATTTACATCCAGGCGT  120
            ||||||| |||||||||||||||||||||||||||  |||||||||||| ||||||||||
Sbjct  87   CGCTGTGGTGGTGGAGCAATCAGAGGCTCGCAAAGGTCGAAAGTATTTAAATCCAGGCGT  146

Query  121  GCTTGACCGGTGCCGTGGTCCTACTCCTCCAGCGGGATGTCATCCTCACAATTCCCACCA  180
            |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  147  GCTTGACCGGTGTCGTGGTCCTAATCCTCCAGCGGGATGTCATCCTCACAATTCCCACCA  206

Query  181  AAAACCCCGTGTCCCTGTTCACAAATATAGTCGTGGTTGCGGTGGAATTAACCGGTGCAG  240
             ||||| || |||||||||||||| ||||||||||||||  || |||||| |||||||||
Sbjct  207  CAAACCTCGCGTCCCTGTTCACAATTATAGTCGTGGTTGTAGTAGAATTACCCGGTGCAG  266

Query  241  ACGAGATGCGTAGGTTTAACCTCACATGACGAC  273
            ||||||||| |||||||||||||||||||||||
Sbjct  267  ACGAGATGCCTAGGTTTAACCTCACATGACGAC  299



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12516669501


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5