BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg930629 Length=442 Score E Sequences producing significant alignments: (Bits) Value AT3G54900.1 | Symbols: CXIP1, ATGRXCP | CAX interacting protein... 588 2e-167 > AT3G54900.1 | Symbols: CXIP1, ATGRXCP | CAX interacting protein 1 | chr3:20341588-20342393 REVERSE LENGTH=806 Length=806 Score = 588 bits (318), Expect = 2e-167 Identities = 378/406 (93%), Gaps = 8/406 (2%) Strand=Plus/Plus Query 18 AAAATGGCTCTCCGATCTGTCAAAACGCCGACCTTGATAACTCCGGTCACCGTCGTCTCC 77 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 20 AAAATGGCTCTCCGATCTGTCAAAACGCCGACCTTGATAACTTCGGTCGCCGTCGTCTCC 79 Query 78 TCCTCCGTTATCAACAAGCCTCAATCTATCAGATTCTCTCTTAAACCAACAG-CGGCACT 136 |||||||||| |||||||||||| |||||||||||||||||||||||||| | ||||||| Sbjct 80 TCCTCCGTTACCAACAAGCCTCACTCTATCAGATTCTCTCTTAAACCAAC-GTCGGCACT 138 Query 137 CGCCGTTCACAACCGTCAGCCATCGTTCTACGGT-C---TC--AAGCTCAAACCAACAAA 190 || ||| || |||| ||||| ||||||||||||| | || ||||| |||||||| || Sbjct 139 CGTCGTCCATAACCATCAGCTATCGTTCTACGGTTCGAATCTCAAGCTGAAACCAACTAA 198 Query 191 ATTCCGATGCTCTGCGTCGGCGCTTACGCCGCAACTTAAAGATACGCTGGAGAAACTGGT 250 |||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 199 ATTCCGATGCTCAGCGTCGGCTCTTACGCCGCAACTTAAAGACACGCTGGAGAAACTGGT 258 Query 251 GAATTCGGAGAAAGTGGTTCTGTTCATGAAAGGAACGAGAGATTTCCCGATGTGTGGATT 310 |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 259 GAATTCGGAGAAAGTGGTTCTGTTTATGAAAGGAACGAGAGACTTCCCGATGTGTGGATT 318 Query 311 CTCCAACACTGTGGTTCAGATCTTGAAGAATTTGAATGTTCCTTTCGAAGATGTGAATAT 370 ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 319 CTCCAACACTGTGGTTCAGATTTTGAAGAATCTGAATGTTCCTTTCGAAGATGTGAATAT 378 Query 371 TCTGGAGAATGAGATCTTGAGGCAAGGACTTAAAGAGTATTCAAAT 416 ||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 379 TCTGGAGAATGAGATGTTGAGGCAAGGACTTAAAGAGTATTCGAAT 424 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21011919082 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5