BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930629
Length=442
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54900.1 | Symbols: CXIP1, ATGRXCP | CAX interacting protein... 588 2e-167
> AT3G54900.1 | Symbols: CXIP1, ATGRXCP | CAX interacting protein
1 | chr3:20341588-20342393 REVERSE LENGTH=806
Length=806
Score = 588 bits (318), Expect = 2e-167
Identities = 378/406 (93%), Gaps = 8/406 (2%)
Strand=Plus/Plus
Query 18 AAAATGGCTCTCCGATCTGTCAAAACGCCGACCTTGATAACTCCGGTCACCGTCGTCTCC 77
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 20 AAAATGGCTCTCCGATCTGTCAAAACGCCGACCTTGATAACTTCGGTCGCCGTCGTCTCC 79
Query 78 TCCTCCGTTATCAACAAGCCTCAATCTATCAGATTCTCTCTTAAACCAACAG-CGGCACT 136
|||||||||| |||||||||||| |||||||||||||||||||||||||| | |||||||
Sbjct 80 TCCTCCGTTACCAACAAGCCTCACTCTATCAGATTCTCTCTTAAACCAAC-GTCGGCACT 138
Query 137 CGCCGTTCACAACCGTCAGCCATCGTTCTACGGT-C---TC--AAGCTCAAACCAACAAA 190
|| ||| || |||| ||||| ||||||||||||| | || ||||| |||||||| ||
Sbjct 139 CGTCGTCCATAACCATCAGCTATCGTTCTACGGTTCGAATCTCAAGCTGAAACCAACTAA 198
Query 191 ATTCCGATGCTCTGCGTCGGCGCTTACGCCGCAACTTAAAGATACGCTGGAGAAACTGGT 250
|||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 199 ATTCCGATGCTCAGCGTCGGCTCTTACGCCGCAACTTAAAGACACGCTGGAGAAACTGGT 258
Query 251 GAATTCGGAGAAAGTGGTTCTGTTCATGAAAGGAACGAGAGATTTCCCGATGTGTGGATT 310
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 259 GAATTCGGAGAAAGTGGTTCTGTTTATGAAAGGAACGAGAGACTTCCCGATGTGTGGATT 318
Query 311 CTCCAACACTGTGGTTCAGATCTTGAAGAATTTGAATGTTCCTTTCGAAGATGTGAATAT 370
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 319 CTCCAACACTGTGGTTCAGATTTTGAAGAATCTGAATGTTCCTTTCGAAGATGTGAATAT 378
Query 371 TCTGGAGAATGAGATCTTGAGGCAAGGACTTAAAGAGTATTCAAAT 416
||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 379 TCTGGAGAATGAGATGTTGAGGCAAGGACTTAAAGAGTATTCGAAT 424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21011919082
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5