BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930630
Length=1588
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25180.1 | Symbols: CYP82G1 | cytochrome P450, family 82, su... 2353 0.0
> AT3G25180.1 | Symbols: CYP82G1 | cytochrome P450, family 82,
subfamily G, polypeptide 1 | chr3:9167285-9169282 REVERSE LENGTH=1718
Length=1718
Score = 2353 bits (1274), Expect = 0.0
Identities = 1478/1577 (94%), Gaps = 11/1577 (1%)
Strand=Plus/Plus
Query 15 ATCACCATGTTCATTT-TCTTTAGTACTCTCCAATTTTCTCTCTTCTCTTTGGCCCTTGT 73
||||||||| | ||| |||||||||||||||| || |||||||||||||||||||||||
Sbjct 7 ATCACCATG-ACTTTTCTCTTTAGTACTCTCCAGTTGTCTCTCTTCTCTTTGGCCCTTGT 65
Query 74 AATCGCCGGTTACATTTTCCTCGGaaaaaaaTTGAGTAAAGGTGAAGTTGATAGCTCCAC 133
|||| ||||||||||||||| ||||| ||||||||| | |||||||||||||||||||
Sbjct 66 AATCTTTGGTTACATTTTCCTCAGAAAACAATTGAGTAGATGTGAAGTTGATAGCTCCAC 125
Query 134 CATCCCTGAGCCATTAGAAGCTTTGCCTCTATTCGGCCACCTCCATCTATTGCGCGGCAA 193
|| ||||||||||| | |||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 126 GATTCCTGAGCCATTGGGAGCTTTGCCTCTATTCGGACACCTCCATCTTTTGCGTGGCAA 185
Query 194 AGAACTCATTTGCAAGAAACTAGCTGCCATGTCCGAAAAACATGGTCCTATCTTCTCCCT 253
| ||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 186 AAAACTCCTTTGCAAGAAATTAGCTGCCATGTCCCAAAAACATGGTCCTATCTTCTCCCT 245
Query 254 CAAGTTAGGGTTTTATAGGCTGGTTGTAGCCAGCGACCCAAAAACGGTGAAAGATTGTTT 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 CAAGTTAGGGTTTTATAGGCTGGTTGTAGCCAGCGACCCAAAAACGGTGAAAGATTGTTT 305
Query 314 CACCAACAACGACATGGCT-CTAGCAACCAGACCCAATATAGCCTTTGGTCGGTACGTAG 372
||||| ||||||| ||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 306 CACCACCAACGACTTGGCTAC-AGCAACCAGACCCAATATAGCCTTTGGTCGGTACGTAG 364
Query 373 GCTACAACAATGCAAGTCTAACACTGGCTCCCTATGGAGACTATTGGCGTGAGTTACGTA 432
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 365 GCTACAACAATGCAAGTCTGACTCTGGCTCCCTATGGAGACTATTGGCGTGAGTTACGTA 424
Query 433 AGATTGCCACCGTCCATCTATTCTCAAACCAGAGTATAGAGATGCTTGGTCACATTCGTT 492
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 425 AGATTGTCACCGTCCATCTATTCTCAAACCACAGTATAGAGATGCTTGGTCACATTCGTT 484
Query 493 CTTCAGAAGTAAACACGTTGATCAAACACCTATACAAAGGGAGTGGTGGAACTTCTATAG 552
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 485 CTTCAGAAGTAAACACGTTGATCAAACACCTATACAAAGGGAATGGTGGAACTTCTATAG 544
Query 553 TGAAGATTGACATGTTATTCGAGTTTTTGACCTTCAATATAATCCTTAGGAAGATGGTGG 612
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 545 TGAAGATTGACATGTTATTTGAGTTTTTGACCTTCAATATAATCCTTAGGAAGATGGTGG 604
Query 613 GGAAGAGGATTAGTTTCGGTGAAGTGAATAGCGAGGAATGGCGTTATAAGGAGGCGTTGA 672
||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 605 GGAAGAGGATTGGTTTCGGTGAAGTGAATAGCGATGAATGGCGTTATAAGGAGGCCCTGA 664
Query 673 AGCATAGCGTGTACTTGGCCGTGATTCCTATGATAGGCGACGTTATTCCATGGCTAGGAT 732
||||| ||| ||||||||| ||||||||||||||||||||||||||||||||| | ||||
Sbjct 665 AGCATTGCGAGTACTTGGCTGTGATTCCTATGATAGGCGACGTTATTCCATGGTTGGGAT 724
Query 733 GGTTGGATTTTGCAAAAATTTCTCAAATGAAGAGATTATTTATGGAGCTTGACTCAGTCA 792
|||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||
Sbjct 725 GGTTGGATTTTGCAAAAAATTCTCAAATGAAGAGACTATTTAAGGAGCTTGACTCAGTCA 784
Query 793 ACACCAAGTGGCTCCAAGAACATCTCAAGAAGAGATCAAGAAATGAGAAGGATCAAGAAA 852
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 ACACCAAGTGGCTCCACGAACATCTCAAGAAGAGATCAAGAAATGAGAAGGATCAAGAAA 844
Query 853 GAACAATCATGGATCTACTACTCGACATCTTACCAGAAGATATTGTGATAAGTGGACATG 912
||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| |
Sbjct 845 GAACAATCATGGATCTACTGCTAGACATCTTACCAGAGGATATTGTGATAAGTGGACACG 904
Query 913 TACGCGATGTCATTGTGAAGGCAACAATTTTGGCTCTCACATTAACGGGATCAGACAGCA 972
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 905 TACGCGATGTCATTGTGAAGGCAACAATTTTGGCTCTCACATTAACAGGATCAGACAGCA 964
Query 973 CATCCATCACTTTGACATGGGCAGTATCGCTACTACTCAACAATCCTGCTACTTTAAAAG 1032
|||||||||||||||||||||| |||||||| |||||||||||||| ||| ||||| |||
Sbjct 965 CATCCATCACTTTGACATGGGCGGTATCGCTGCTACTCAACAATCCAGCTGCTTTAGAAG 1024
Query 1033 CAGCACAAGAAGAAATTGACAATTGTGTCGGGAAAGGTAGATGGGTTGAAGAATCCGACT 1092
||||||||||||| ||||| ||| ||||||| |||||||||||| ||||||||||||| |
Sbjct 1025 CAGCACAAGAAGAGATTGATAATAGTGTCGGCAAAGGTAGATGGATTGAAGAATCCGA-T 1083
Query 1093 -TACAAAACCTTAAGTACCTACAAGCTATTGTTAAGGAAACTCACCGACTTTACCCGCCC 1151
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1084 ATACAAAACCTCAAGTACCTACAAGCTATTGTTAAGGAAACGCACCGACTTTACCCGCCG 1143
Query 1152 GCTCCTCTTACAGGAATCCGTGAAGCACGGGAAGATTGTTTCGTGGGAGGATACCGTGTT 1211
|||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1144 GCTCCTCTAACAGGAATCCGCGAAGCACGTGAAGATTGTTTCGTGGGAGGATACCGTGTT 1203
Query 1212 AAGAAAGGCACACGCTTGCTCGCCAACATTTGGAAACTTCATAGGGATCCCAAGATCTGG 1271
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1204 GAGAAAGGCACACGCTTGCTCGTAAACATATGGAAACTTCATAGGGATCCCAAGATCTGG 1263
Query 1272 CCTGACCCCCAAGCCTTTGAGCCTGAGAGGTTCATGGAGGAGAAATCACAATGTGAAAAG 1331
||||||||| || ||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1264 CCTGACCCCAAAACCTTTAAGCCTGAGAGGTTCATGGAGGATAAATCACAATGTGAAAAG 1323
Query 1332 AGCGACTTTGGATACATTCCTTTCGGTTCGGGAAGAAGGTCGTGTCCGGGGGTCAATCTT 1391
||| |||||| |||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1324 AGCAACTTTGAATACATTCCTTTCGGTTCGGGAAGGAGGTCGTGTCCGGGAGTCAATCTT 1383
Query 1392 GGTCTAAGAGTTGTACACTTCGTGTTGGCTCGAATGCTTCAAGGCTTTGAGTTACGCAAA 1451
|||||||||||||||||||| || |||||| || |||||||||| |||||||||| ||||
Sbjct 1384 GGTCTAAGAGTTGTACACTTTGTATTGGCTAGATTGCTTCAAGGGTTTGAGTTACACAAA 1443
Query 1452 GTGTCTGATGAACCAGTGGATATGGCTGAAGGGCCTGGTTTAGCCTTGCCAAAGATTAAC 1511
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1444 GTGTCTGATGAACCACTGGATATGGCTGAAGGGCCTGGTTTAGCCTTGCCAAAGATTAAC 1503
Query 1512 CCGGTCGAAGTTGTTGTAATGCCTCGACTCGAACCGGAGTTGTATAGTTCACTCTGAATT 1571
||||||||||| |||||||||||||| ||||| ||| |||||||||||| ||||| ||
Sbjct 1504 CCGGTCGAAGTAGTTGTAATGCCTCGGCTCGACCCGAAGTTGTATAGTTTACTCT-AA-- 1560
Query 1572 AAACCATTGTGTACTCG 1588
| ||||||||||||||
Sbjct 1561 A--CCATTGTGTACTCG 1575
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78413251290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5