BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930632
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71110.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 237 6e-62
AT5G24050.1 | Symbols: | Domain of unknown function (DUF313) ... 182 3e-45
AT3G24850.1 | Symbols: | Domain of unknown function (DUF313) ... 122 2e-27
> AT1G71110.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G12400.1); Has
173 Blast hits to 169 proteins in 21 species: Archae - 0;
Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 165; Viruses
- 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr1:26818083-26821004
FORWARD LENGTH=1987
Length=1987
Score = 237 bits (128), Expect = 6e-62
Identities = 150/160 (94%), Gaps = 4/160 (3%)
Strand=Plus/Plus
Query 59 AAAGGTGGAATCTCATTAGCACCAGGACCT---TCAGCTGATGATGTCTCTGATTACCTC 115
|||||||||||||||||||||||||||||| || | ||||| ||||||||||||||||
Sbjct 300 AAAGGTGGAATCTCATTAGCACCAGGACCTGAATCTGATGATGTTGTCTCTGATTACCTC 359
Query 116 GTCTTAGCAGCTCATAGAACCAAGAGACCTGACATTCTTAGAGCTTTTAAGCCTTACCAT 175
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CTCTTAGCAGCTCATAGAACCAAGAGACCTGACATTCTTAGAGCTTTTAAGCCTTACCAT 419
Query 176 GGCGGCTGGAACATCACCAATAATCATTATTGGGCT-CTG 214
|| ||||||||||||||||||||||| ||||||||| |||
Sbjct 420 GGTGGCTGGAACATCACCAATAATCACTATTGGGCTTCTG 459
> AT5G24050.1 | Symbols: | Domain of unknown function (DUF313)
| chr5:8128353-8129402 REVERSE LENGTH=1050
Length=1050
Score = 182 bits (98), Expect = 3e-45
Identities = 126/140 (90%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 244 GATCGAAGACCCACAAAACCATCTTCAACGGCTAACTTCTTCATGTTTCATCGCCGCTGA 303
|||||||||||||||||||||||||||| ||||| | |||||||||||||| |||||| |
Sbjct 288 GATCGAAGACCCACAAAACCATCTTCAAGGGCTATCCTCTTCATGTTTCATTGCCGCTAA 347
Query 304 TTCCAAGACGAAAACACTACAAAACCCTAGTTCTGAACTTTGTTCTTCACTCGTACTCTT 363
|||| |||| |||||| |||||||||||||||| |||| |||||||||||||| ||||||
Sbjct 348 TTCCGAGACAAAAACATTACAAAACCCTAGTTCAGAACCTTGTTCTTCACTCGGACTCTT 407
Query 364 TGATTACAAGATGGCTGAGT 383
|| | |||||| ||||||||
Sbjct 408 TGGTCACAAGACGGCTGAGT 427
> AT3G24850.1 | Symbols: | Domain of unknown function (DUF313)
| chr3:9071105-9072184 FORWARD LENGTH=1080
Length=1080
Score = 122 bits (66), Expect = 2e-27
Identities = 76/81 (94%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 312 CGAAAACACTACAAAACCCTAGTTCTGAACTTTGTTCTTCACTCGTACTCTTTGATTACA 371
||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 401 CGAAAACCCTACAAAACCCTAGTTCTGAACTTTGTTCATCACTCGTACTCTCTGATTACA 460
Query 372 AGATGGCTGAGTCTGAGAAGA 392
||||||||||||| || ||||
Sbjct 461 AGATGGCTGAGTCGGAAAAGA 481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19906028604
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5