BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg930632 Length=420 Score E Sequences producing significant alignments: (Bits) Value AT1G71110.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 237 6e-62 AT5G24050.1 | Symbols: | Domain of unknown function (DUF313) ... 182 3e-45 AT3G24850.1 | Symbols: | Domain of unknown function (DUF313) ... 122 2e-27 > AT1G71110.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G12400.1); Has 173 Blast hits to 169 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 165; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr1:26818083-26821004 FORWARD LENGTH=1987 Length=1987 Score = 237 bits (128), Expect = 6e-62 Identities = 150/160 (94%), Gaps = 4/160 (3%) Strand=Plus/Plus Query 59 AAAGGTGGAATCTCATTAGCACCAGGACCT---TCAGCTGATGATGTCTCTGATTACCTC 115 |||||||||||||||||||||||||||||| || | ||||| |||||||||||||||| Sbjct 300 AAAGGTGGAATCTCATTAGCACCAGGACCTGAATCTGATGATGTTGTCTCTGATTACCTC 359 Query 116 GTCTTAGCAGCTCATAGAACCAAGAGACCTGACATTCTTAGAGCTTTTAAGCCTTACCAT 175 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 CTCTTAGCAGCTCATAGAACCAAGAGACCTGACATTCTTAGAGCTTTTAAGCCTTACCAT 419 Query 176 GGCGGCTGGAACATCACCAATAATCATTATTGGGCT-CTG 214 || ||||||||||||||||||||||| ||||||||| ||| Sbjct 420 GGTGGCTGGAACATCACCAATAATCACTATTGGGCTTCTG 459 > AT5G24050.1 | Symbols: | Domain of unknown function (DUF313) | chr5:8128353-8129402 REVERSE LENGTH=1050 Length=1050 Score = 182 bits (98), Expect = 3e-45 Identities = 126/140 (90%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 244 GATCGAAGACCCACAAAACCATCTTCAACGGCTAACTTCTTCATGTTTCATCGCCGCTGA 303 |||||||||||||||||||||||||||| ||||| | |||||||||||||| |||||| | Sbjct 288 GATCGAAGACCCACAAAACCATCTTCAAGGGCTATCCTCTTCATGTTTCATTGCCGCTAA 347 Query 304 TTCCAAGACGAAAACACTACAAAACCCTAGTTCTGAACTTTGTTCTTCACTCGTACTCTT 363 |||| |||| |||||| |||||||||||||||| |||| |||||||||||||| |||||| Sbjct 348 TTCCGAGACAAAAACATTACAAAACCCTAGTTCAGAACCTTGTTCTTCACTCGGACTCTT 407 Query 364 TGATTACAAGATGGCTGAGT 383 || | |||||| |||||||| Sbjct 408 TGGTCACAAGACGGCTGAGT 427 > AT3G24850.1 | Symbols: | Domain of unknown function (DUF313) | chr3:9071105-9072184 FORWARD LENGTH=1080 Length=1080 Score = 122 bits (66), Expect = 2e-27 Identities = 76/81 (94%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 312 CGAAAACACTACAAAACCCTAGTTCTGAACTTTGTTCTTCACTCGTACTCTTTGATTACA 371 ||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct 401 CGAAAACCCTACAAAACCCTAGTTCTGAACTTTGTTCATCACTCGTACTCTCTGATTACA 460 Query 372 AGATGGCTGAGTCTGAGAAGA 392 ||||||||||||| || |||| Sbjct 461 AGATGGCTGAGTCGGAAAAGA 481 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19906028604 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5