BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930634
Length=664
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25190.1 | Symbols: | Vacuolar iron transporter (VIT) famil... 708 0.0
> AT3G25190.1 | Symbols: | Vacuolar iron transporter (VIT) family
protein | chr3:9174457-9175776 FORWARD LENGTH=870
Length=870
Score = 708 bits (383), Expect = 0.0
Identities = 431/454 (95%), Gaps = 4/454 (1%)
Strand=Plus/Plus
Query 214 CGGGTGCTTGTAGTATGGCTATTGGAGAGTTTGTGTCTGTATGCACCCAAAGGGATATTG 273
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 278 CGGGTGCTTGTAGTATGGCTATTGGAGAGTTTGTGTCTGTGTGCACCCAAAGGGATATTG 337
Query 274 AAACTGCGCAGATGAAGAGAGCTATTGAGA-ATAAGACATCATTATCAGAAATCGACGAA 332
||||||| |||||||||||||||||||| | ||||||||||| |||||| ||||||||||
Sbjct 338 AAACTGCACAGATGAAGAGAGCTATTGA-ACATAAGACATCACTATCAGCAATCGACGAA 396
Query 333 CAAGAGGAGGAGGAGAAGAAAGAACGGCTGCCAAATCCAGGGCAAGCAGCAATTGCATCA 392
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 397 CAAGAGGAGGAGGAGAAGAAAGAAAGGCTGCCAAATCCAGGGCAAGCAGCAATTGCATCG 456
Query 393 GCGTTAGCGTTTTCTGTGGGTGCAGCAATGCCGCTTTTGGCCGCTGTATTCATAGAGAAT 452
|||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 457 GCGTTAGCGTTTTCAGTGGGTGCAGCAATGCCGCTTCTGGGCGCTGTATTCATAGAGAAT 516
Query 453 CATAAGGTAAGAATGGTTGTGGTAGCGATTGTGGCCACCATAGCATTAGTTGTGTTTGGA 512
||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 517 CATAAGGTAAGAATGGTGGTGGTAGCGGTTGTGGCCACCATAGCATTGGTTGTGTTTGGA 576
Query 513 GTGACCGGTGCGGTCTTGGGAAAGACAAGTGTGGCTAAGTCGAGCGTTAGAGTGGTGATT 572
||||| |||||||||||||||||||||||||||| |||||||||||| || |||||||||
Sbjct 577 GTGACTGGTGCGGTCTTGGGAAAGACAAGTGTGGTTAAGTCGAGCGTCAGGGTGGTGATT 636
Query 573 GGTGGTTGGATGGCTATGGCTCTTACCTTTGGTCTCACTAAGTTCATTGGCTCCGCAGCC 632
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 637 GGTGGTTGGATGGCTATGGCTCTTACCTTTGGTCTCACCAAGTTCATTGGCTCTGCAGCC 696
Query 633 ATGCAAATTTAGAGGCTCTTT-ATGTGGTC-TTC 664
|||||||| |||||||||||| |||||||| |||
Sbjct 697 ATGCAAATCTAGAGGCTCTTTCATGTGGTCCTTC 730
Score = 318 bits (172), Expect = 4e-86
Identities = 200/213 (94%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 1 CTTAGTACTAATTCCAAACCATGGCTTCCAACGTTCAGCTTTCAGAAACAAGCAGCCCAA 60
||| ||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 29 CTTTGTACTAAATCCAAACCATGACTTCCAACGTTCAGCTTTCAGAAACAAACAGCCCAA 88
Query 61 GGAGTCAGAAAAACTGTCCGAGAGTAGAGAAGGAGGAAGTGGACTACATGCAGAGAGCTC 120
||| |||||||| | ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 89 GGAATCAGAAAACCCGTCCGAGAGCAGAGAAGGAGGAAGTGGACTACATGCAGAGAGCTC 148
Query 121 AGTGGCTAAGAGCTGCCTTGCTCGATCGGAGCCAACGATGGTCTGGTCACAGTTGCTTCG 180
|||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||
Sbjct 149 AGTGGCTAAGAGCTGCCTTGCT---T-GGAGCCAACGATGGTCTGGTCACAGTCGCTTCG 204
Query 181 CTAATGATGGGTGTTGGTTCTATCAAAGAAGAC 213
|||||||||||||||||||||||||||||||||
Sbjct 205 CTAATGATGGGTGTTGGTTCTATCAAAGAAGAC 237
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32099619933
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5