BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg930639 Length=239 Score E Sequences producing significant alignments: (Bits) Value AT5G60110.1 | Symbols: APUM18, PUM18 | pumilio 18 | chr5:242019... 209 8e-54 AT5G60180.1 | Symbols: APUM19, PUM19 | pumilio 19 | chr5:242330... 209 8e-54 > AT5G60110.1 | Symbols: APUM18, PUM18 | pumilio 18 | chr5:24201954-24202937 FORWARD LENGTH=984 Length=984 Score = 209 bits (113), Expect = 8e-54 Identities = 143/157 (91%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 1 GACAAAACAGAGCTTCAGAGGATGGCCTCGTTGCTGACGTCAGACTCCGATTACTTCACG 60 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| | Sbjct 196 GACAAAACAGAGCTTCAGAGGATGGCCTCGTTGCTTACGTCTGACTCCGATTACTTCATG 255 Query 61 ACGATCGTCGCAAACAAGTACGGCTCGA-AGCGCGTGCAGAAGCTCCTAGGAAAATCAGA 119 |||||||| ||| ||||| |||||||| | ||||||||||||||||| || |||||||| Sbjct 256 TCGATCGTCACAACCAAGTTCGGCTCGAGA-CGCGTGCAGAAGCTCCTCGGCAAATCAGA 314 Query 120 TGACGTGGACGCGCT-CTTCTGCGCCGCTATCTTGCG 155 |||||||||||| || |||||| |||||||||||||| Sbjct 315 TGACGTGGACGC-CTTCTTCTGTGCCGCTATCTTGCG 350 Score = 119 bits (64), Expect = 1e-26 Identities = 80/87 (92%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 153 GCGAGGAATGAGTTTGGGAATTTCGTGGTGGTCAAGGCACTGCGATTCACCAAGGAGATG 212 |||||||||||||||||||||||||||||||||||||| ||| ||||||||||| | || Sbjct 808 GCGAGGAATGAGTTTGGGAATTTCGTGGTGGTCAAGGCTCTGAGATTCACCAAG-A--TG 864 Query 213 TCTATGATTGATCTGTTTTGGGGTTTG 239 |||| ||| |||||||||||||||||| Sbjct 865 TCTAGGATGGATCTGTTTTGGGGTTTG 891 > AT5G60180.1 | Symbols: APUM19, PUM19 | pumilio 19 | chr5:24233024-24234007 REVERSE LENGTH=984 Length=984 Score = 209 bits (113), Expect = 8e-54 Identities = 143/157 (91%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 1 GACAAAACAGAGCTTCAGAGGATGGCCTCGTTGCTGACGTCAGACTCCGATTACTTCACG 60 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| | Sbjct 196 GACAAAACAGAGCTTCAGAGGATGGCCTCGTTGCTTACGTCTGACTCCGATTACTTCATG 255 Query 61 ACGATCGTCGCAAACAAGTACGGCTCGA-AGCGCGTGCAGAAGCTCCTAGGAAAATCAGA 119 |||||||| ||| ||||| |||||||| | ||||||||||||||||| || |||||||| Sbjct 256 TCGATCGTCACAACCAAGTTCGGCTCGAGA-CGCGTGCAGAAGCTCCTCGGCAAATCAGA 314 Query 120 TGACGTGGACGCGCT-CTTCTGCGCCGCTATCTTGCG 155 |||||||||||| || |||||| |||||||||||||| Sbjct 315 TGACGTGGACGC-CTTCTTCTGTGCCGCTATCTTGCG 350 Score = 119 bits (64), Expect = 1e-26 Identities = 80/87 (92%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 153 GCGAGGAATGAGTTTGGGAATTTCGTGGTGGTCAAGGCACTGCGATTCACCAAGGAGATG 212 |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| Sbjct 808 GCGAGGAATGAGTTTGGGAATTTCGTGGTGGTCAAGGCACTGAGATTCACAAAGGAGATG 867 Query 213 TCTATGATTGATCTGTTTTGGGGTTTG 239 | ||| |||||||||||||||||| Sbjct 868 ---AGGATGGATCTGTTTTGGGGTTTG 891 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 10807566035 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5