BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930639

Length=239
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G60110.1 | Symbols: APUM18, PUM18 | pumilio 18 | chr5:242019...   209    8e-54
  AT5G60180.1 | Symbols: APUM19, PUM19 | pumilio 19 | chr5:242330...   209    8e-54


> AT5G60110.1 | Symbols: APUM18, PUM18 | pumilio 18 | chr5:24201954-24202937 
FORWARD LENGTH=984
Length=984

 Score =  209 bits (113),  Expect = 8e-54
 Identities = 143/157 (91%), Gaps = 4/157 (3%)
 Strand=Plus/Plus

Query  1    GACAAAACAGAGCTTCAGAGGATGGCCTCGTTGCTGACGTCAGACTCCGATTACTTCACG  60
            ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
Sbjct  196  GACAAAACAGAGCTTCAGAGGATGGCCTCGTTGCTTACGTCTGACTCCGATTACTTCATG  255

Query  61   ACGATCGTCGCAAACAAGTACGGCTCGA-AGCGCGTGCAGAAGCTCCTAGGAAAATCAGA  119
             |||||||| ||| ||||| |||||||| | ||||||||||||||||| || ||||||||
Sbjct  256  TCGATCGTCACAACCAAGTTCGGCTCGAGA-CGCGTGCAGAAGCTCCTCGGCAAATCAGA  314

Query  120  TGACGTGGACGCGCT-CTTCTGCGCCGCTATCTTGCG  155
            |||||||||||| || |||||| ||||||||||||||
Sbjct  315  TGACGTGGACGC-CTTCTTCTGTGCCGCTATCTTGCG  350


 Score =  119 bits (64),  Expect = 1e-26
 Identities = 80/87 (92%), Gaps = 3/87 (3%)
 Strand=Plus/Plus

Query  153  GCGAGGAATGAGTTTGGGAATTTCGTGGTGGTCAAGGCACTGCGATTCACCAAGGAGATG  212
            |||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |  ||
Sbjct  808  GCGAGGAATGAGTTTGGGAATTTCGTGGTGGTCAAGGCTCTGAGATTCACCAAG-A--TG  864

Query  213  TCTATGATTGATCTGTTTTGGGGTTTG  239
            |||| ||| ||||||||||||||||||
Sbjct  865  TCTAGGATGGATCTGTTTTGGGGTTTG  891


> AT5G60180.1 | Symbols: APUM19, PUM19 | pumilio 19 | chr5:24233024-24234007 
REVERSE LENGTH=984
Length=984

 Score =  209 bits (113),  Expect = 8e-54
 Identities = 143/157 (91%), Gaps = 4/157 (3%)
 Strand=Plus/Plus

Query  1    GACAAAACAGAGCTTCAGAGGATGGCCTCGTTGCTGACGTCAGACTCCGATTACTTCACG  60
            ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
Sbjct  196  GACAAAACAGAGCTTCAGAGGATGGCCTCGTTGCTTACGTCTGACTCCGATTACTTCATG  255

Query  61   ACGATCGTCGCAAACAAGTACGGCTCGA-AGCGCGTGCAGAAGCTCCTAGGAAAATCAGA  119
             |||||||| ||| ||||| |||||||| | ||||||||||||||||| || ||||||||
Sbjct  256  TCGATCGTCACAACCAAGTTCGGCTCGAGA-CGCGTGCAGAAGCTCCTCGGCAAATCAGA  314

Query  120  TGACGTGGACGCGCT-CTTCTGCGCCGCTATCTTGCG  155
            |||||||||||| || |||||| ||||||||||||||
Sbjct  315  TGACGTGGACGC-CTTCTTCTGTGCCGCTATCTTGCG  350


 Score =  119 bits (64),  Expect = 1e-26
 Identities = 80/87 (92%), Gaps = 3/87 (3%)
 Strand=Plus/Plus

Query  153  GCGAGGAATGAGTTTGGGAATTTCGTGGTGGTCAAGGCACTGCGATTCACCAAGGAGATG  212
            |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct  808  GCGAGGAATGAGTTTGGGAATTTCGTGGTGGTCAAGGCACTGAGATTCACAAAGGAGATG  867

Query  213  TCTATGATTGATCTGTTTTGGGGTTTG  239
               | ||| ||||||||||||||||||
Sbjct  868  ---AGGATGGATCTGTTTTGGGGTTTG  891



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10807566035


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5