BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930645
Length=475
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24050.1 | Symbols: | Domain of unknown function (DUF313) ... 614 3e-175
AT3G25182.1 | Symbols: | Pseudogene of AT5G24050; DNA binding ... 603 6e-172
AT3G24850.1 | Symbols: | Domain of unknown function (DUF313) ... 549 8e-156
> AT5G24050.1 | Symbols: | Domain of unknown function (DUF313)
| chr5:8128353-8129402 REVERSE LENGTH=1050
Length=1050
Score = 614 bits (332), Expect = 3e-175
Identities = 408/445 (92%), Gaps = 4/445 (1%)
Strand=Plus/Plus
Query 7 TCTTTGATTACAAGATGGCTGAGT-CCGAGGAGAGGGAGACGAAAGACCCACAAAATCCT 65
|||||| | |||||| |||||||| || | ||| ||||||||||||||||| ||| |||
Sbjct 404 TCTTTGGTCACAAGACGGCTGAGTACC-AAAAGACGGAGACGAAAGACCCACCAAACCCT 462
Query 66 AA-TTCCCAATCTTCTCTGTCTTTGTGCCTAACGGAGAACACAAGCCGCAAGAGACGTGC 124
|| ||||| || | || ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 463 AATTTCCC-ATGTACTATGTCTTTGTGCCTAATGGAGAACACAAGCCGCAAGAGACGTGC 521
Query 125 TGTGGAACAGAGGAAGCGTAGTGGTGGAGTCAAGAAAGCAAAGGTTGCTCCTTCTTCAGG 184
||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 522 TGTGGAACAAAGGAAGCGTAGTGGTGGAGTCAAGAAAGCAAATGTTGCTCCTTTTTCACA 581
Query 185 GACAGCGAGAGAGACGCCTGAGTGGCTTGTCAAGGTGATGAGAGACATGAAAGAAGTTAA 244
|| ||||||||||| ||||||||||||||||||||||||| | |||||||||||| ||
Sbjct 582 AACGGCGAGAGAGACACCTGAGTGGCTTGTCAAGGTGATGACAAACATGAAAGAAGCCAA 641
Query 245 AGACGCTAAACTGATATTTGAGAAGACTCTGTTCGTGACTGATGTAAACCCAACACAGAA 304
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 642 AGACGCTAAATTGATCTTTGAGAAGACTCTGTTCGTGACTGATGTAAACCCAACAAAGAA 701
Query 305 CCGTCTCTCAATGCCTTTCAACAACTTAATCCGAAACGATTTCCTGACGTCTGTGGAGTC 364
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 702 CCGTCTCTCAATGCCTTTCAACAACTTACTCCGAAACGATTTCCTGACGTCTGTGGAGTC 761
Query 365 CATAATCATAAACGAAGACATCAACAACAATAAGAAGATTGGAGTGGGAGTGATTCTCGT 424
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 762 CATAATCATAAACGAAGACATCAACAACAATAACAAGATTGGAGTGGGAGCGATTCTCGT 821
Query 425 GGATCAACGGTCTGAGAAGTGGGGT 449
||||||||||| | | |||||||||
Sbjct 822 GGATCAACGGTGTAAAAAGTGGGGT 846
> AT3G25182.1 | Symbols: | Pseudogene of AT5G24050; DNA binding
protein | chr3:9171056-9172204 REVERSE LENGTH=1026
Length=1026
Score = 603 bits (326), Expect = 6e-172
Identities = 409/450 (91%), Gaps = 2/450 (0%)
Strand=Plus/Plus
Query 1 TCGTAGTCTTTGATTACAAGATGGCTGAGTCCGAGGAGAGGGAGACGAAAGACCCACAAA 60
||||| ||||||||| ||||| ||||| ||||||| ||| |||||||||||||||| ||
Sbjct 374 TCGTACTCTTTGATTGCAAGACGGCTGGGTCCGAGAAGACAGAGACGAAAGACCCACCAA 433
Query 61 ATCCTAA-TTCCCAATCTTCTCTGTCTTTGTGCCTAACGGAGAACACAAGCCGCAAGAGA 119
| ||||| ||||| || | ||||||||||||||||||||||||||| || ||||||||||
Sbjct 434 ACCCTAATTTCCC-ATGTCCTCTGTCTTTGTGCCTAACGGAGAACAAAAACCGCAAGAGA 492
Query 120 CGTGCTGTGGAACAGAGGAAGCGTAGTGGTGGAGTCAAGAAAGCAAAGGTTGCTCCTTCT 179
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 493 CGTGCTGTGGAACAGAGGAAGCGTACTGGTGGAGTCAAGAAAGCAAAGGTTGCTCCTTTT 552
Query 180 TCAGGGACAGCGAGAGAGACGCCTGAGTGGCTTGTCAAGGTGATGAGAGACATGAAAGAA 239
||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 553 TCACAAACGGCGAGAGAGACGCCTGAGTGGCTTGTCAATGTGATGAGAGACATGAAAGAA 612
Query 240 GTTAAAGACGCTAAACTGATATTTGAGAAGACTCTGTTCGTGACTGATGTAAACCCAACA 299
| |||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 613 GCCAAAGACGCTAAATTGATCTTTGAGAAGACTCTGTTCGTTACTGATGTAAACCCAACA 672
Query 300 CAGAACCGTCTCTCAATGCCTTTCAACAACTTAATCCGAAACGATTTCCTGACGTCTGTG 359
||||||||||||||||||||||||||||||||| |||| ||||||||| |||| ||||||
Sbjct 673 CAGAACCGTCTCTCAATGCCTTTCAACAACTTACTCCGCAACGATTTCTTGACTTCTGTG 732
Query 360 GAGTCCATAATCATAAACGAAGACATCAACAACAATAAGAAGATTGGAGTGGGAGTGATT 419
||||| | ||||||| || |||||||||| ||| ||||||||||||||||||||| ||||
Sbjct 733 GAGTCAAGAATCATAGACAAAGACATCAAAAACGATAAGAAGATTGGAGTGGGAGCGATT 792
Query 420 CTCGTGGATCAACGGTCTGAGAAGTGGGGT 449
|| ||||||||||||| | |||||||||||
Sbjct 793 CTTGTGGATCAACGGTGTAAGAAGTGGGGT 822
> AT3G24850.1 | Symbols: | Domain of unknown function (DUF313)
| chr3:9071105-9072184 FORWARD LENGTH=1080
Length=1080
Score = 549 bits (297), Expect = 8e-156
Identities = 403/451 (89%), Gaps = 19/451 (4%)
Strand=Plus/Plus
Query 1 TCGTAGTCTTTGATTACAAGATGGCTGAGTCCGAGGAGAGGGAGACGAAAGACCCACAAA 60
||||| ||| ||||||||||||||||||||| || ||| |||||||||||| || |
Sbjct 443 TCGTACTCTCTGATTACAAGATGGCTGAGTCGGAAAAGATGGAGACGAAAGA-CC-C--- 497
Query 61 ATCCTAATTCCCAATCTTCTCTGTCTTTGTGCCTAACGGAGAACACAAGCCGCAAGAGAC 120
| || | || | ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 498 A-CC--A-----AA-C-CCTCTGTCTTTGTGCCTAACGGGGAACACAAGCCGCAAGAGAC 547
Query 121 GTGCTGTGGAACAGAGGAAGCGTAGTGGTGGAGTCAAGAAAGCAAAGGTTGCTCCTTCTT 180
||||||||||| ||||||| |||| |||||| ||||||| |||||||||||||||| ||
Sbjct 548 GTGCTGTGGAAGAGAGGAAACGTACCGGTGGATTCAAGAAGGCAAAGGTTGCTCCTT-TT 606
Query 181 -CAGGGACAGCGAGAGAGACGCCTGAGTGGCTTGTCAAGGTGATGAGAGACATGAAAGAA 239
|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 607 CCAGGGACAGCGAGAGATACGCCTAAGTGGCTTGTCAAGGTGATGAGAGACATGAAAGAA 666
Query 240 GTTAAAGACGCTAAACTGATATTTGAGAAGACTCTGTTCGTGACTGATGTAAACCCAACA 299
| ||||| ||||||||||| ||||||||||||||||| ||||||||| |||||||||||
Sbjct 667 GCCAAAGATGCTAAACTGATCTTTGAGAAGACTCTGTTTGTGACTGATATAAACCCAACA 726
Query 300 CAGAACCGTCTCTCAATGCCTTTCAACAACTTAATCCGAAACGATTTCCTGACGTCTGTG 359
|||||||||||||||||||| |||||||||||| ||| |||||||||| |||||||||||
Sbjct 727 CAGAACCGTCTCTCAATGCCGTTCAACAACTTACTCCAAAACGATTTCTTGACGTCTGTG 786
Query 360 GAGTCCATAATCATAAACGAAGACATCAACAACAATAAGAAGATTGGAGTGGGAGTGATT 419
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 787 GAGTCCAGAATCATAAAGGAAGACATCAACAACAATAAGAAGATTGGAGTGGGAGCGATT 846
Query 420 CTCGTGGATCAACGGTCTG-AGAAGTGGGGT 449
||||||||||||||||||| | |||||||||
Sbjct 847 CTCGTGGATCAACGGTCTGTA-AAGTGGGGT 876
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22605366150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5