BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930646
Length=237
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25182.1 | Symbols: | Pseudogene of AT5G24050; DNA binding ... 268 1e-71
AT5G24050.1 | Symbols: | Domain of unknown function (DUF313) ... 255 1e-67
AT3G24850.1 | Symbols: | Domain of unknown function (DUF313) ... 217 4e-56
> AT3G25182.1 | Symbols: | Pseudogene of AT5G24050; DNA binding
protein | chr3:9171056-9172204 REVERSE LENGTH=1026
Length=1026
Score = 268 bits (145), Expect = 1e-71
Identities = 193/215 (90%), Gaps = 8/215 (4%)
Strand=Plus/Plus
Query 24 AGTATGTATTACGATGAGGTTCATCTCACGGCTTCAGGGAAAG-GCATGTGGTCGAATTT 82
|||||||||||| || | | ||||||||| ||||||||| ||| |||||||||||||||
Sbjct 7 AGTATGTATTACAATCACGATCATCTCACTGCTTCAGGG-AAGAACATGTGGTCGAATTT 65
Query 83 ATGTGTACTGGTTGATGCGG-GGTTATGTTATATGAAGAAG---AACAACGTCGTACGAC 138
| ||||||||||||| ||| ||| |||||||||||||||| |||||||||||| ||
Sbjct 66 CTATGTACTGGTTGATACGGCGGTGATGTTATATGAAGAAGAAAAACAACGTCGTAAGAT 125
Query 139 TGTCTCTGAAGAAGAAGCAGAAAGC-CAGAAGAGAATCTTTTGTCTCTTCCCGAGAAAAA 197
||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||
Sbjct 126 TGTCTCTGAAGAAGAAGAAGAAA-CACAGAAGAGAATCTTTTGTCTCTTCCCGAGAAAAA 184
Query 198 CAAGATCGTCTTTGGTGAAGAGACAACAAAAGCTT 232
|||||||||||||||| ||||||||||||||||||
Sbjct 185 CAAGATCGTCTTTGGTAAAGAGACAACAAAAGCTT 219
> AT5G24050.1 | Symbols: | Domain of unknown function (DUF313)
| chr5:8128353-8129402 REVERSE LENGTH=1050
Length=1050
Score = 255 bits (138), Expect = 1e-67
Identities = 197/223 (88%), Gaps = 13/223 (6%)
Strand=Plus/Plus
Query 24 AGTATGTATTACGATGA-G--GTTCATCTCACGGCTTCAGGGAAAGGCATGTGGTCGAAT 80
||||| ||| ||||||| | | |||||||||||||||||| |||| | |||||||||||
Sbjct 7 AGTATCTATCACGATGATGACGATCATCTCACGGCTTCAGGTAAAGACCTGTGGTCGAAT 66
Query 81 TTATGTGTACTGGTTGATGCGG-GGTTATGTTATAT---------GAAGAAGAACAACGT 130
|| ||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 67 TTCTGTGTACTGGTTGATGCGGCGGTTATGTTATATGAAGAAGAAGAAGAAGAACAACGT 126
Query 131 CGTACGACTGTCTCTGAAGAAGAAGCAGAAAGCCAGAAGAGAATCTTTTGTCTCTTCCCG 190
|||| || ||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 127 CGTAAGATTGTCTCTGAAGAAGAAGAAGAATTCCAGAAGAGAATCTTTTGTCTCTTCCCG 186
Query 191 AGAAAAACAAGATCGTCTTTGGTGAAGAGACAACAAAAGCTTA 233
|||||||||||||||||||||||||||||||||||||| ||||
Sbjct 187 AGAAAAACAAGATCGTCTTTGGTGAAGAGACAACAAAATCTTA 229
> AT3G24850.1 | Symbols: | Domain of unknown function (DUF313)
| chr3:9071105-9072184 FORWARD LENGTH=1080
Length=1080
Score = 217 bits (117), Expect = 4e-56
Identities = 188/220 (85%), Gaps = 14/220 (6%)
Strand=Plus/Plus
Query 24 AGTATGTATTACGATGAGGTTCATCTCACGGCTTCAGGGAAAGGCATGTGGTCGAA-TT- 81
||||||||| ||||| | | ||||||||||||||||||||| ||| |||||||||| ||
Sbjct 7 AGTATGTATCACGATTACGATCATCTCACGGCTTCAGGGAAGGGCCTGTGGTCGAAGTTC 66
Query 82 TATGTGTACTGGTTGATGCGG-GGTTATGTTATATGAAGAAGA-ACAACGTCGTACGAC- 138
|||| | |||||| ||||||| |||| |||||||||| | ||| |||||||||| | |
Sbjct 67 TATG-G-ACTGGTGGATGCGGCGGTTTTGTTATATGATG-AGATACAACGTCGT--GGCA 121
Query 139 TGTCTCTGAAGAAGAAGCAGAAAGCCAGAAGAGAATCTTTTGTCTCTTCCCGAGAA-AAA 197
| || | | |||| |||||||||||||||||| ||||||||||||||||||| |||
Sbjct 122 AG-ATC-GTATCTGAAGAAGAAAGCCAGAAGAGAATATTTTGTCTCTTCCCGAGAAGAAA 179
Query 198 CAAGATCGTCTTTGGTGAAGAGACAACAAAAGCTTAATGG 237
|||||||||||||||||||||||||||||||||||||||
Sbjct 180 -AAGATCGTCTTTGGTGAAGAGACAACAAAAGCTTAATGG 218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10707030537
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5