BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930648

Length=428
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G17490.1 | Symbols:  | F-box and associated interaction doma...  52.8    3e-06


> AT3G17490.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr3:5984827-5985993 FORWARD LENGTH=1167
Length=1167

 Score = 52.8 bits (28),  Expect = 3e-06
 Identities = 28/28 (100%), Gaps = 0/28 (0%)
 Strand=Plus/Plus

Query  47  GGATTTGGTAGAGGAGATACTCTCTAGG  74
           ||||||||||||||||||||||||||||
Sbjct  24  GGATTTGGTAGAGGAGATACTCTCTAGG  51



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20308170596


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5