BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930649

Length=190
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G24850.1 | Symbols:  | Domain of unknown function (DUF313)  ...   141    2e-33


> AT3G24850.1 | Symbols:  | Domain of unknown function (DUF313) 
 | chr3:9071105-9072184 FORWARD LENGTH=1080
Length=1080

 Score =  141 bits (76),  Expect = 2e-33
 Identities = 121/142 (85%), Gaps = 6/142 (4%)
 Strand=Plus/Plus

Query  21   ATGAATATTATGTATCACGATTACGATCATCTCACGGCTTCAGGGAAGAACCTGTGGTCG  80
            |||| || ||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct  1    ATGAGTAGTATGTATCACGATTACGATCATCTCACGGCTTCAGGGAAGGGCCTGTGGTCG  60

Query  81   AATTTCTTTGTACTGGTTGATGCGGCGGTAATGTTATATGAAGAAGA-ACAACGCCGT--  137
            || |||| || |||||| |||||||||||  |||||||||| || || |||||| |||  
Sbjct  61   AAGTTCTATGGACTGGTGGATGCGGCGGTTTTGTTATATGATGA-GATACAACGTCGTGG  119

Query  138  -AAGATT-TCTCCGAAGAAGAA  157
             |||||  | || |||||||||
Sbjct  120  CAAGATCGTATCTGAAGAAGAA  141



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8400325617


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5