BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930652
Length=996
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20390.1 | Symbols: | Glycosyl hydrolase superfamily protei... 1162 0.0
> AT5G20390.1 | Symbols: | Glycosyl hydrolase superfamily protein
| chr5:6892831-6894195 REVERSE LENGTH=1270
Length=1270
Score = 1162 bits (629), Expect = 0.0
Identities = 832/932 (89%), Gaps = 6/932 (1%)
Strand=Plus/Plus
Query 62 GAGACAACCTTCCACCTCCATCTGAAGTTATCAACCTCTACAAGTCTTTTAAGTATAACC 121
|||||||||| || |||||||||||||||||||||||||||||||| |||||| | |||
Sbjct 206 GAGACAACCTCCCGCCTCCATCTGAAGTTATCAACCTCTACAAGTC-CTTAAGTGTTACC 264
Query 122 AATATTCGGATCTTTGACACGAA-TACAGATGTCCTTAACGCCTTCCGAGGGAACCGTGA 180
|||||||||||||| ||||| || ||| ||||||||||||||||| |||||||| || |
Sbjct 265 AATATTCGGATCTTCGACAC-AACTACGGATGTCCTTAACGCCTTTCGAGGGAATCGCAA 323
Query 181 TATTGGAGTTATGGTAGGTGTGAAAAACCAAGACTTAGAGGCTCTTTCGGTCAGCGAAGA 240
||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 324 TATCGGAGTTATGGTAGACGTGAAGAACCAAGACTTAGAGGCTCTTTCGGTCAGCGAAGA 383
Query 241 CGCTGTTAACACATGGTTCGTGACCAACATTCAGCCTTACTTAGCTGATGTCAACATCAC 300
||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 384 AGCTGTTAACACCTGGTTCGTGACCAACATTGAGCCTTACTTAGCTGATGTCAACATCAC 443
Query 301 GTTCATTACTGTTGGGAATGAAATCATCCCCGGAGAAATCGGCTCTTACGTGCTACCCGT 360
||||||| |||| ||||| ||| ||||||| || |||||||||||||| |||||||||||
Sbjct 444 GTTCATTGCTGTCGGGAACGAAGTCATCCCAGGGGAAATCGGCTCTTATGTGCTACCCGT 503
Query 361 CATGCAATCTCTCACCAACGTTGTCAAGTCGAGGAGTCTCCCAATCTTGATTAGTACCAC 420
|||| |||||||||||||| |||||||||||||||||||||| |||||||| || |||||
Sbjct 504 CATGAAATCTCTCACCAACATTGTCAAGTCGAGGAGTCTCCCGATCTTGATCAGCACCAC 563
Query 421 GGTGGCTATGACCAACCTTGGCCAATCGTATCCACCTTCCGCCGGAGATTTCACGCCCCA 480
|||||||||||||||||||||||| || ||||||||||| ||||||||||||| ||| ||
Sbjct 564 GGTGGCTATGACCAACCTTGGCCAGTCATATCCACCTTCGGCCGGAGATTTCATGCCTCA 623
Query 481 AGCACGTGAACAACTTACCCCGGTGCTGAAGTTTTTGTCTCAAACAAATACACCTATCCT 540
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 624 AGCACGTGAACAACTTACCCCGGTGCTGAAGTTTTTGTCTCAAACAAATACGCCTATCCT 683
Query 541 CGTCAACATTTACCCCTACTTCGCTTATGCAGCTGATCCTGTCAACATTCATCTTGATTA 600
||||||||| |||||||||||||| ||||| ||||||||| |||||||||| || || ||
Sbjct 684 CGTCAACATCTACCCCTACTTCGCATATGCTGCTGATCCTATCAACATTCAGCTCGACTA 743
Query 601 TGCAATCTTCAACACCGATGCGGTTGTGGTCCAAGATGGGCCACTTGGTTATTCAAACAT 660
||| |||||||||||| | ||| ||||||||||| ||||||||||||||| |||||||
Sbjct 744 TGCCATCTTCAACACCAACAAGGTCGTGGTCCAAGACGGGCCACTTGGTTATACAAACAT 803
Query 661 GTTTGATGTGATATTTGATGCGTTTGTATGGGCAATGGAGAAAGAGGGCATAAAAGATTT 720
||| |||||||||||||||||||| |||||||||||||||||||| || | || |||||
Sbjct 804 GTTCGATGTGATATTTGATGCGTTCGTATGGGCAATGGAGAAAGAAGGTGTGAAGGATTT 863
Query 721 ACCGATGGTGGTAATGGAGACCGGATGGCCGTCTGCCGGTAACGGAAACTTAACAACTCC 780
||| |||||||||| || || |||||||| ||||| ||||||||||||||||| |||||
Sbjct 864 ACCAATGGTGGTAACAGAAACTGGATGGCCATCTGCTGGTAACGGAAACTTAACGACTCC 923
Query 781 TTATATCGCGTCTATGTACAACAGCAATTTTGTCAAACATGTAGAAAGCGGTAAAGGGAC 840
||||||| ||||| ||||| | ||||||||| |||||||| |||||||||||||||||
Sbjct 924 AGATATCGCATCTATATACAATACCAATTTTGTTAAACATGTGGAAAGCGGTAAAGGGAC 983
Query 841 ACCGAAGAGGCCAAACAATAGCATAAATGGATTTTTATTTGCTACGTTCAATGAAAATCA 900
|| ||||| ||||| | | |||| | ||||||| ||||||| ||||||||||| |||||
Sbjct 984 GCCAAAGAGACCAAAGAGTGGCATTAGTGGATTTCTATTTGCGACGTTCAATGAGAATCA 1043
Query 901 GAAGCCACCTGGAACCGAACAAAATTTTGGATTGTACTA-TCCTACTGATATGAAGCCCA 959
|||||| | |||||||||||||||||||| || || || ||| || |||||||||||||
Sbjct 1044 AAAGCCAGCGGGAACCGAACAAAATTTTGGGTTATA-TAATCCAACAGATATGAAGCCCA 1102
Query 960 TCTACAAGTTGTTTTGATTTG-AGATTCTTGA 990
|||||||| ||||||||||| ||||||||||
Sbjct 1103 TCTACAAGATGTTTTGATTTTTAGATTCTTGA 1134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48777356737
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5