BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930655
Length=1180
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25210.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1729 0.0
> AT3G25210.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:9180348-9181839 FORWARD LENGTH=1492
Length=1492
Score = 1729 bits (936), Expect = 0.0
Identities = 1084/1154 (94%), Gaps = 15/1154 (1%)
Strand=Plus/Plus
Query 21 ATGTCGGCGACACTCCGACGCCTCATCCTTCTCTCCTCCGCTAATCGCTCCATTAATTC- 79
|||||||||||||||||||||||||| |||||| ||||| | ||||||||| ||| ||
Sbjct 1 ATGTCGGCGACACTCCGACGCCTCATTCTTCTCACCTCCACAAATCGCTCCCGTAA-TCT 59
Query 80 ATCTCCGTCGTACCTTTCCTCCACCGTGAATCACTTATCTCTATCATTCTCTTCCGTCTC 139
||||||| ||| |||||| || ||||||| ||| |||||||||||||||||||||||||
Sbjct 60 ATCTCCGCCGTTTCTTTCCACCGCCGTGAACCACCTATCTCTATCATTCTCTTCCGTCTC 119
Query 140 ATCTTCATCGGAATCACACACCTCCCCTCCCCGGATTCGAACCCGAACTCCACTCGGAAC 199
||||||| ||||||||||||| |||||| ||||||| ||||||||||| ||||||| |||
Sbjct 120 ATCTTCACCGGAATCACACACTTCCCCTTCCCGGATCCGAACCCGAACACCACTCGAAAC 179
Query 200 TCAATTCGAAACATGGATCCAGAATCTAAAACCAGGATTCACAAACTCCGATGTTGTAAC 259
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
Sbjct 180 TCAATTCGAAACATGGATTCAGAATCTAAAACCAGGATTCACAAACTCCGACGTTGTGAT 239
Query 260 AGCGTTACGAGCTCAATCAGATCCAGATCTAGCTCTCGACATTTTCCGATGGACAGCTCA 319
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 240 AGCGTTACGAGCTCAATCCGATCCAGATCTAGCTCTCGACATATTCCGATGGACAGCTCA 299
Query 320 ACAACGAGGCTACAAACACAATCACGAAGCTTACCACACTATGATCAAACAAGCAATCAC 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ACAACGAGGCTACAAACACAATCACGAAGCTTACCACACTATGATCAAACAAGCAATCAC 359
Query 380 CGGAAAACGAAACAAATTCGTCGAAACGTTAATCGAAGAAGTAATCGCCGGAGCTTGTGA 439
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CGGAAAACGAAACAACTTCGTCGAAACGTTAATCGAAGAAGTAATCGCCGGAGCTTGTGA 419
Query 440 AATGAGTGTTCCTCTCTACAATTGCATCATCAGATTCTGTTGTGGTCGTAAGTTTCTCTT 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AATGAGTGTTCCTCTCTACAATTGCATCATCAGATTCTGTTGTGGTCGTAAGTTTCTCTT 479
Query 500 TAATCGAGCTTTTGATGTTTATAACAAAATGCTTCGATCAGATGATTCAAAGCCTGATCT 559
||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 480 CAATAGAGCTTTCGATGTTTATAACAAAATGCTTCGATCAGATGATTCAAAGCCTGACCT 539
Query 560 TGAAACCTATACTTTGCTTCTAAGCTCATTGCTTAAGAGATTCAATAAATTGAATGTGTG 619
|||||| ||||||||||| ||||| |||||||||||||||||||| ||||||||||||||
Sbjct 540 TGAAACTTATACTTTGCTACTAAGTTCATTGCTTAAGAGATTCAACAAATTGAATGTGTG 599
Query 620 TTATGTGTATCTACATGCCGTTAGATCGCTTA-CGAAGCAGATGAAATCGAGCGGTGTGA 678
||||||||||||||| |||||||||||| ||| |||||||||||||||||| |||||||
Sbjct 600 TTATGTGTATCTACACGCCGTTAGATCG-TTAACGAAGCAGATGAAATCGAATGGTGTGA 658
Query 679 TTCCGGATACGTTTGTGTTGAATATGATTATCAAAGCTTATGCAAAGTGTCTTGAGGTAG 738
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 659 TTCCGGATACGTTTGTGTTGAATATGATTATCAAAGCTTATGCAAAGTGTCTTGAGGTTG 718
Query 739 ATGAAGCTATAAGGGT-TTATAAAGAGATGGCTTTGTATGGTTCTGAGCCAAATGCTTAT 797
||||||||||||| || || ||||||||||||||| ||||| |||||||| |||||||||
Sbjct 719 ATGAAGCTATAAGAGTGTT-TAAAGAGATGGCTTTATATGGCTCTGAGCCTAATGCTTAT 777
Query 798 ACTTATAGTTACTT-GATTAAAGGGGTTTGTGAGAAAGGAAG-GCTTGGACAAGGTTTAG 855
|||||||||||||| | |||||||||||||||||||||| || | ||||||| |||||||
Sbjct 778 ACTTATAGTTACTTAG-TTAAAGGGGTTTGTGAGAAAGGTAGAG-TTGGACAGGGTTTAG 835
Query 856 GGTTTTATAAGGAGATG-AGGAGT-AAAGGGATGGTTCCGAATGGGAGTTGTTATATGGT 913
||||||||||||||||| | ||| ||||| |||||||||||||||||||||||||||||
Sbjct 836 GGTTTTATAAGGAGATGCA--AGTCAAAGGAATGGTTCCGAATGGGAGTTGTTATATGGT 893
Query 914 TTTGATTTGTAGTTTGTCTATGGAGAGGAGATTGAATGAAGCGGTTGAGGTTGTGTATGA 973
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 894 TTTGATTTGTAGTTTGTCTATGGAGAGGAGATTGGATGAAGCTGTTGAGGTTGTGTATGA 953
Query 974 TATGTTGGCGAATTCGTTGTCTCCGGATATGTTGACTTATAATACGGTTTTGACGGAGTT 1033
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 954 TATGTTGGCGAATTCGTTGTCTCCGGATATGTTGACGTATAATACGGTGTTGACGGAGTT 1013
Query 1034 GTGTAGGGGAGGTAGAGGGGGTGAAGCTCTTGAGTTGGTTGAGGAATGGAAGAAACGGGA 1093
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1014 GTGTAGGGGAGGTAGAGGGAGTGAAGCTCTTGAGATGGTTGAGGAATGGAAGAAACGGGA 1073
Query 1094 TCCGGTTATGGGTGAAAGGAATTACAGAACGTTGATGGACGAGGTGTATTTTTTGAACAA 1153
|||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 1074 TCCGGTGATGGGTGAAAGGAATTACAGAACGTTGATGGATGAGGTTTATTTTTTGAATAA 1133
Query 1154 GGGATGATTTGATT 1167
||||||||| ||||
Sbjct 1134 GGGATGATT-GATT 1146
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57931428930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5