BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930656

Length=500
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G25220.1 | Symbols: FKBP15-1 | FK506-binding protein 15 kD-1...   756    0.0  


> AT3G25220.1 | Symbols: FKBP15-1 | FK506-binding protein 15 kD-1 
| chr3:9182616-9184679 FORWARD LENGTH=753
Length=753

 Score =  756 bits (409),  Expect = 0.0
 Identities = 462/486 (95%), Gaps = 9/486 (2%)
 Strand=Plus/Plus

Query  21   GATGAGCTCTGCATCCGCCATGAAAGCTATTGGAGTTTTGCTTCTGCTTACCGTTCTAAC  80
            |||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct  78   GATGAGCTCTGCATCCGCCATGAAAGCTGTTGGATTTTTGCTTCTGCTTACCATTCTAAC  137

Query  81   ATTAGCTTATGCGAAGAAGTCTGGTGATGTGACAGAGTTGCAGATTGGTGTCAAGTACAA  140
            ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct  138  ATTAGCTTATGCGAAGAAGTCAGGTGATGTGACAGAGTTGCAGATTGGTGTTAAGTACAA  197

Query  141  GCCTCAGAAATGTGATCTTCAGGCTCACAAAGGGGACAAGATCAAGGTCCATTATCGGGG  200
            |||||||||||||||||| ||||||||||||||||| ||||||||||| || ||||||||
Sbjct  198  GCCTCAGAAATGTGATCTCCAGGCTCACAAAGGGGATAAGATCAAGGTTCACTATCGGGG  257

Query  201  AAAGTTAACTGATGGAACTGTCTTTGATTCAAGTTTTGAGAGAGGCGACCCTATTGAGTT  260
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  258  AAAGTTAACTGATGGAACTGTCTTTGATTCAAGTTTTGAGAGAGGTGACCCTATTGAGTT  317

Query  261  TGAGCTTGGAACTGGTCAAGTCATCCCAGGATGGGACCAGGGTTTACTT-GGCGCTTGTG  319
            |||||||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct  318  TGAGCTTGGAACTGGTCAAGTCATCCCAGGATGGGACCAGGGTTTA-TTGGGAGCTTGTG  376

Query  320  TAGGTGAGAAGAGAAAGCTGAAAATCCCATCCAAGCTTGGTTATGGTGATAACGGCTCAC  379
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  377  TAGGTGAGAAGAGAAAGTTGAAAATCCCATCCAAGCTTGGTTATGGTGATAACGGCTCAC  436

Query  380  CACCAAAAATCCCGGGTGGGGCGACACTGATATTCGACACTGAGCTTGTTGCTGTGAACG  439
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  437  CACCAAAAATCCCGGGTGGGGCGACACTGATATTCGACACCGAGCTTGTTGCTGTGAACG  496

Query  440  G-GAAACCATCCAGCGAAG-GAAAAGCAAAGAATGAGCTTTGATTACATC-T--TTGTTT  494
            | ||| ||||||||||||| ||||  |||||||||||||||||||||| | |  ||||||
Sbjct  497  GAGAA-CCATCCAGCGAAGCGAAAT-CAAAGAATGAGCTTTGATTACACCATAATTGTTT  554

Query  495  TTCATT  500
            ||||||
Sbjct  555  TTCATT  560



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23861219825


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5