BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930658
Length=334
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24190.1 | Symbols: | Protein kinase superfamily protein | ... 217 7e-56
> AT3G24190.1 | Symbols: | Protein kinase superfamily protein
| chr3:8743253-8747901 FORWARD LENGTH=2646
Length=2646
Score = 217 bits (117), Expect = 7e-56
Identities = 176/203 (87%), Gaps = 9/203 (4%)
Strand=Plus/Plus
Query 95 AGCTGGTGCAAGCAATGG-GGTCTTCGGATTCAGAAACGCAACACCAATCTTCGGTATGT 153
|||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||
Sbjct 2114 AGCTGGTGCAAGCAATGGCGGTATTCGGATTCAGAAACGCGACACCAATCTTCGGTATGT 2173
Query 154 T---ACCAACATTGGAACCTTTCAAACATGCAGCACTTCTTCCAT---TAACACAAGAAG 207
| ||||||| ||| ||| ||||| | ||||||||||||||||| | || ||||||
Sbjct 2174 TACCACCAACACTGGGACCCTTCAAGCCTGCAGCACTTCTTCCATCCGTGACGGAAGAAG 2233
Query 208 ACAAAGTCATCTTGAACAATGTTCAGAAAGTAATCGAGTTCACTAAT-GTAAGAAGCTCC 266
|||| |||||||||||||||||||||||||||||||||||| || | | ||||||||||
Sbjct 2234 ACAAGGTCATCTTGAACAATGTTCAGAAAGTAATCGAGTTC-CTTACCGCAAGAAGCTCC 2292
Query 267 ATGTTGAATATTCCCAATCAGGT 289
|||| ||||| ||| |||||||
Sbjct 2293 ATGTCGAATAATCCTGATCAGGT 2315
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15583002190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5