BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930661
Length=889
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25240.1 | Symbols: | Protein of unknown function (DUF506) ... 1092 0.0
> AT3G25240.1 | Symbols: | Protein of unknown function (DUF506)
| chr3:9192540-9193385 FORWARD LENGTH=846
Length=846
Score = 1092 bits (591), Expect = 0.0
Identities = 764/849 (90%), Gaps = 6/849 (1%)
Strand=Plus/Plus
Query 21 ATGGCGATTTTCTCAAGAACCAAACGTGTCACTGACCCACTTGACGACGACGCCAAGGCT 80
|||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1 ATGGCGATTTTCTCCAGAACCAAACGTGTCACTGATCCACTTGACGACGACGCGAAGGCT 60
Query 81 CGGATCTTCAGCAGCCACGGCTGCATCCTAGACCAAGACTCTCCTCGACTCTACGAGCTT 140
|||||||| ||||||||| | | ||||||||||||||| ||||||||||||| ||||||
Sbjct 61 CGGATCTTGAGCAGCCACAGTTACATCCTAGACCAAGATTCTCCTCGACTCTGCGAGCTC 120
Query 141 GTACACGGGTTT-TTCGAGGATGGTCCCGAAGAAACATTCTACGACTCTGACTCCAAACT 199
|||||||||||| || ||||||||||| ||||| ||||||||||||||||| || | ||
Sbjct 121 GTACACGGGTTTCTT-GAGGATGGTCCTGAAGAGTCATTCTACGACTCTGACCCCGACCT 179
Query 200 GTCTGAGAATTCTGT-AGTTGAATGTCCCAGCGAAGATAGTGAGGAGATCCTGAGGATGA 258
|||||||| |||| | || |||| | | | |||| ||||| ||||||| |||| |||
Sbjct 180 GTCTGAGACTTCT-TCAGCTGAACATTCTGGTGAAGCTAGTGTGGAGATCGTGAGAATGG 238
Query 259 CAGTGAGCTTATCTGATTCCGATCCTTACCAGAATCTATTGCTAGCTCACGTTTTGAGAG 318
| |||||||| || |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 239 CGGTGAGCTTCTCCGATTCCGATCCTTACCGGAATCTATTGCTAGCTCACGTTTTGAGAG 298
Query 319 CGGTGGAGGCATACTCCGGTTTTAGGTCAAGGAATAAATCTGTTTTCGGGGACAAGGTAG 378
| ||||||| ||| |||||||||||||||||||| ||| |||||||| |||| |||||||
Sbjct 299 CCGTGGAGGTATATTCCGGTTTTAGGTCAAGGAACAAAACTGTTTTCCGGGATAAGGTAG 358
Query 379 TTTCGTTTCTACGAGAGCTCGGCT-ACAACGCCGCGGTTTGTGTATCAAAATGGACCTCA 437
||||||||| |||||||| || | || |||||||||||||||||||||||||||||||
Sbjct 359 CTTCGTTTCTGCGAGAGCTTGG-TCACGACGCCGCGGTTTGTGTATCAAAATGGACCTCT 417
Query 438 TCGTCCAAACTCATCGCCGGGAGTTACCATTTCATTGACGTCGTTTACAAGAAGTCAGAT 497
|| |||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||
Sbjct 418 TCATCCAAACTCATCGCTGGGAGTTACCATTTCATTGACGTCGTTCACAAGCCGTCAGAT 477
Query 498 AATGATCAGACGGCCGTCCGTTACTTCGTTGATCTCGACTTTGCTTCAGAGTTCGAGATC 557
|||||||||| ||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 478 AATGATCAGAAGGCCGTCCGTTACTTGGTTGATCTAGACTTTGCTTCGGAGTTCGAGATC 537
Query 558 GCAAGGCCAACACGCGAATACACGCGTGTGTTGCAGTTGCTGCCTAACGTTTTTGTGGGA 617
||||||||||| |||||||||||||||| | ||||| |||||||||||||||| || |||
Sbjct 538 GCAAGGCCAACGCGCGAATACACGCGTGGGCTGCAGCTGCTGCCTAACGTTTTCGTAGGA 597
Query 618 AAAGAAGAGAATCTGAGGACGATCGTGAGAGAGTCATGTGACGCAGCGAAGAGGTCGTTG 677
|| ||||||||||| ||||||||||||||||||||||| ||||| |||||| | || ||
Sbjct 598 AATGAAGAGAATCTAAGGACGATCGTGAGAGAGTCATGCGACGCGGCGAAGCGATCAATG 657
Query 678 AAGAGCCGTGGCTTGTCTCTCCCACCGTGGCGGAGAAGCTCTTATTTGCAACACAAGTGG 737
|||||||||||||||||||| ||||||||||||||||||||||| || || || ||||||
Sbjct 658 AAGAGCCGTGGCTTGTCTCTTCCACCGTGGCGGAGAAGCTCTTACTTACAGCATAAGTGG 717
Query 738 TTTAGTCCGTATAAAAGAAAGGTGGGATCTAGTTTGGGAGTGAAGCCGTTGAATAGTGAC 797
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TTTGGTCCGTACAAAAGAAAGGTGGGATCTAGTTTGGGAGTGAAGCCGTTGAATAGTGAC 777
Query 798 GCCGTTAGCTGCCGCTCTTTAGGGTATGATGACGGCGCCGTCAATACTCGTTTGTTCATT 857
|||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 778 GCCGTTAGTTGCCGATCTTTAGGGTTTGATGACGGCGCCGTCAATACTCGTTTGTTCATC 837
Query 858 AGGGCATGA 866
|||||||||
Sbjct 838 AGGGCATGA 846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43402303008
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5