BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930665

Length=340
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G32235.1 | Symbols:  | unknown protein; Has 38 Blast hits to...  93.5    1e-18


> AT2G32235.1 | Symbols:  | unknown protein; Has 38 Blast hits 
to 38 proteins in 14 species: Archae - 0; Bacteria - 4; Metazoa 
- 11; Fungi - 11; Plants - 11; Viruses - 0; Other Eukaryotes 
- 1 (source: NCBI BLink). | chr2:13682557-13685500 REVERSE 
LENGTH=2156
Length=2156

 Score = 93.5 bits (50),  Expect = 1e-18
 Identities = 63/69 (91%), Gaps = 2/69 (3%)
 Strand=Plus/Plus

Query  244   GATCTTCTCGCTCCAATGCAATTCCTGAAGCTGAGCTTGTGAATCCAGAAAGCTCTGCA-  302
             |||||||||||||||||||||||||||||| ||| || | ||||||||||||||||| | 
Sbjct  1544  GATCTTCTCGCTCCAATGCAATTCCTGAAGGTGATCTCGCGAATCCAGAAAGCTCTG-AT  1602

Query  303   GCCAATAAG  311
             |||||||||
Sbjct  1603  GCCAATAAG  1611



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15884608684


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5